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KarchinLab / TCRtoolkit Public

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Quarto notebooks#81

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KevinMLanderos wants to merge 6 commits into

mainKarchinLab/TCRtoolkit:mainfrom

quarto-notebooksKarchinLab/TCRtoolkit:quarto-notebooksCopy head branch name to clipboard

Conversation Commits6 (6)Checks Files changed

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Quarto notebooks#81
KevinMLanderos wants to merge 6 commits into
mainfrom
quarto-notebooks

Commits

Commits on Apr 26, 2026

Ensured notebooks worked for sc and bulk scenarios. Modified notebook default parameters in nextflow.config file. Added dependencies to conda environment that are used in notebooks
KevinMLanderos
committed
Updated README.md
KevinMLanderos
committed

Commits on Apr 27, 2026

Keep env name as 'base'
KevinMLanderos
committed
Add giana, overlap and pheno_sc notebooks
KevinMLanderos
committed
Remove unused notebooks
KevinMLanderos
committed
Fixed env.yaml dash version
KevinMLanderos
committed

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