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  1. multimodal_integration_demo multimodal_integration_demo Public

    End-to-end MOFA+ (unsupervised) and DIABLO (supervised) multi-omics integration demo using CLL and breast.TCGA datasets

    Jupyter Notebook 1

  2. agent_til_reference_projection agent_til_reference_projection Public

    MCP wrapper for TIL reference projection workflows

    Jupyter Notebook

  3. variant-calling-workshop variant-calling-workshop Public

    Jupyter Notebook

  4. spatio-transcriptomics-receptor-interaction spatio-transcriptomics-receptor-interaction Public

    Spatial TIL analysis pipeline: cell2location deconvolution, LIANA ligand-receptor, TCR clonotype mapping, and TIL exhaustion projection for 10x Visium breast cancer data

    Jupyter Notebook

  5. causal_inference_oncology causal_inference_oncology Public

    Jupyter Notebook

  6. resume_agent resume_agent Public

    Python