HFinder is a Python framework for the automated detection, segmentation, and annotation of hyphal and filamentous structures in microscopy images.
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Feb 17, 2026 - Python
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plant-microbe-interactions
Here are 7 public repositories matching this topic...
Bioinformatic workflow, statistical analysis and figure preparation for the "Wild again: Recovery of a beneficial Cannabis seed endophyte from low domestication genotypes" MS
plant-breeding plant-microbe-interactions bacterial-communities plant-fitness plant-microbiome seed-endophytes
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May 16, 2025 - Shell
Supplementary information/data for Pritchard & Birch (2014) doi:10.1111/mpp.12210
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Nov 11, 2014 - Component Pascal
Scripts used to analyze tomato meta-transcriptome from short-read host RNA-seq data in Chialva et al. (2020)
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Dec 30, 2019 - R
🌱 Strain-resolved metagenomics and comparative genomics of root-associated Variovorax isolates (Beals & Carper et al. 2026).
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Jun 9, 2026 - R
Reproducible Python workflow for curating and exploring sequence features of characterized Fulvia fulva ECP and effector proteins.
python bioinformatics reproducible-research computational-biology plant-pathology tomato plant-microbe-interactions protein-sequence-analysis fungal-effectors fulvia-fulva ecp-proteins receptor-effector-interactions
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Jun 6, 2026 - Jupyter Notebook
hamPCR + Douglas-fir + needle fungi
microbiome mycobiome fungi high-throughput-sequencing metabarcoding microbiome-analysis leaves amplicon-sequencing plant-microbe-interactions compositional-data-analysis endophyte hampcr
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Feb 23, 2023 - HTML
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