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pdbe

Here are 8 public repositories matching this topic...

PDBeurope / pdbe-api-training

Interactive Python notebooks for PDBe API training

python bioinformatics structural-biology pdb rest-api jupyter-notebooks training-materials data-access pdbe api-tutorial

Updated Feb 11, 2026
Jupyter Notebook

molstar / ipymolstar

Mol* as anywidget

pdbe molstar anywidget molviewspec

Updated Oct 13, 2025
Jupyter Notebook

PDBeurope / PDBe_Programming

PDBe Programming Interfaces information

python api bioinformatics structural-biology pdb rest-api tutorials jupyter-notebooks data-access pdbe

Updated Jul 23, 2018
Jupyter Notebook

biomadeira / pyPDBeREST

A python wrapper for the PDBe REST API

python api rest pdbe

Updated Jun 25, 2017
Python

PDBeurope / PDBe-MCP-Servers

PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through API tools and graph database schema assistance for intelligent Cypher query generation, bridging structural biology and AI research.

python bioinformatics structural-biology mcp api-server knowledge-graph pdbe protein-structures llm-tools ai-integration

Updated Jan 29, 2026
Python

Guillawme / insights-from-the-pdb

Various statistics on the Protein Data Bank

pdb pdbe pdb-database pdbe-s-rest-api pdb-dataset

Updated Feb 11, 2024
HTML

Joseph-Ellaway / per-residue-distance

Calculates the per-residue atomic distance between two proteins

bioinformatics structural-biology protein-structure matplotlib rmsd euclidean-distances pdbe bioinformatics-tool gemmi

Updated Jan 5, 2024
Python

PDBeurope / pdbe-notebooks

python bioinformatics structural-biology pdb scientific-computing data-analysis jupyter-notebooks pdbe protein-structures

Updated Jan 19, 2026
Jupyter Notebook

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