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flux-variability

Here are 7 public repositories matching this topic...

CNApy

cnapy-org / CNApy

An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

bioinformatics systems-biology computational-biology constraint-programming cobra metabolic-models sbml flux-balance-analysis metabolic-reconstruction constraint-based-modeling fba metabolic-engineering flux-variability stoichiometric-modeling fva metabolic-networks constraint-based-analysis constraint-based-reconstruction

Updated Mar 13, 2026
Python

klamt-lab / COBRA-k

A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to documentation and tutorials:

bioinformatics systems-biology computational-biology metabolism cobra metabolic-models sbml flux-balance-analysis metabolic-engineering kinetic-modeling sbml-model metabolic-flux-analysis flux-variability sbml-simulation

Updated Mar 6, 2026
Python

mjenior / riptide

Reaction Inclusion by Parsimony and Transcript Distribution

metabolism transcriptomics cobrapy pfba flux-sampling flux-variability opencobra

Updated Feb 14, 2023
Python

openCONTRABASS / CONTRABASS

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

python modeling vulnerabilities metabolism cobrapy metabolic-models flux-balance-analysis dead-end chokepoint flux-variability essential-genes essential-reactions

Updated Oct 14, 2023
HTML

Biomathsys / DPM-SAU-in-HSA-nose

This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.

microbial-communities flux-balance-analysis constraint-based-modeling optimazation nasal flux-variability staphylococcus-aureus

Updated Jul 27, 2022
Jupyter Notebook

BaloniLab / iMiceBrain

Genome-scale metabolic model of mouse brain (iMiceBrain) and case study of Tricyclic pyrone drug

bioinformatics toxicology computational-biology drugs predictive-analysis predictive-modeling bioinformatics-analysis alzheimers-disease cobrapy metabolic-models flux-balance-analysis metabolic-reconstruction metabolic-flux-analysis bioinformatics-tool cobratoolbox flux-sampling flux-variability alzheimers-research metabolic-modeling

Updated Aug 21, 2025

Biomathsys / ncmw

A metabolic modeling workflow for communities of organisms in an nasal medium.

microbial-communities flux-balance-analysis constraint-based-modeling genome-scale-models nasal flux-variability

Updated May 9, 2022
Python

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