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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1.1k 250

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 485 112

3. cellrank cellrank Public

   CellRank: dynamics from multi-view single-cell data

   Python 416 51

4. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 397 66

5. scib scib Public

   Benchmarking analysis of data integration tools

   Python 405 74

6. ehrapy ehrapy Public

   Electronic Health Record Analysis with Python.

   Python 329 40