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St. Jude Children's Research Hospital

Finding Cures, Saving Children.

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  1. learngenomics.dev learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    JavaScript 390 38

  2. ROSE ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 63 17

  3. proteinpaint proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    JavaScript 48 13

  4. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 41 13

  5. CICERO CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 41 22

  6. RNAIndel RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 24 8

Repositories

Showing 10 of 51 repositories
  • proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    stjude/proteinpaint’s past year of commit activity
    JavaScript 48 13 93 6 Updated Feb 9, 2026
  • learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    stjude/learngenomics.dev’s past year of commit activity
    JavaScript 390 38 7 1 Updated Feb 8, 2026
  • icore-image Public
    stjude/icore-image’s past year of commit activity
    Python 4 0 4 3 Updated Feb 4, 2026
  • fuzzion2 Public

    fuzzy fusion finder

    stjude/fuzzion2’s past year of commit activity
    HTML 6 Apache-2.0 3 0 0 Updated Feb 2, 2026
  • EasyFiji Public

    Source code for easyfiji project (maintain by Aaron Taylor and Chen LI)

    stjude/EasyFiji’s past year of commit activity
    Java 0 MIT 0 0 1 Updated Nov 30, 2025
  • CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    stjude/CICERO’s past year of commit activity
    Perl 41 22 7 0 Updated Nov 28, 2025
  • RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    stjude/RNAIndel’s past year of commit activity
    Python 24 Apache-2.0 8 0 0 Updated Nov 21, 2025
  • ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    stjude/ROSE’s past year of commit activity
    Python 63 17 3 0 Updated Nov 14, 2025
  • SICER2 Public

    sicer2

    stjude/SICER2’s past year of commit activity
    Python 0 MIT 2 3 0 Updated Nov 14, 2025
  • fuzzion2_patgen Public

    tools for creating patterns for use with fuzzion2

    stjude/fuzzion2_patgen’s past year of commit activity
    Perl 0 Apache-2.0 1 0 0 Updated Nov 5, 2025