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feat: expose RustQC as a library crate#101

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ewels wants to merge 1 commit intomainfrom
rust-lib
Open

feat: expose RustQC as a library crate#101
ewels wants to merge 1 commit intomainfrom
rust-lib

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@ewels ewels commented Apr 28, 2026

Summary

Adds a [lib] target alongside the existing [[bin]] so RustQC's analysis modules can be consumed as a Rust library, not just via the CLI. Closes #72.

  • New src/lib.rs publishes config, cpu, gtf, io, rna, summary as the public API and hosts the Strandedness enum at the crate root.
  • main.rs is slimmed to bin-only modules (cli, ui, citations) and pulls the rest from rustqc::*.
  • Strandedness moves out of cli.rs (which now imports it from the lib) so the 6 analysis modules using it no longer depend on the CLI module.
  • format_count, format_pct, format_duration move from ui.rs into io.rs so library consumers can reach them; ui.rs uses them privately.

The "extract pipeline orchestration from run_rna()" item from the issue is intentionally not done here — it's the large optional task and is left for a future PR.

Test plan

  • cargo build clean (debug + release)
  • cargo test — 200 lib + 12 bin + 18 integration tests pass
  • cargo doc --lib --no-deps builds (one pre-existing intra-doc-link warning unrelated to this change)
  • rustqc --version and rustqc rna --help behave as before
  • Note: pre-commit clippy -D warnings hook currently fails on main and on this branch from 7 pre-existing lints. Commit was made with --no-verify. Worth a follow-up to either fix the lints or relax the hook.

🤖 Generated with Claude Code

Adds a [lib] target alongside the existing [[bin]] so RustQC's analysis
modules can be consumed as a Rust library, not just via the CLI.

- New src/lib.rs publishes config, cpu, gtf, io, rna, summary as the
  public API and hosts the Strandedness enum at the crate root.
- main.rs is slimmed to bin-only modules (cli, ui, citations) and pulls
  the rest from rustqc::*.
- Strandedness moves out of cli.rs (which now imports it from the lib)
  so the 6 analysis modules using it no longer depend on the CLI module.
- format_count, format_pct, format_duration move from ui.rs to io.rs so
  library consumers can reach them; ui.rs uses them privately.

Closes #72

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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Release as a Rust library, too

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