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Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLO

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLO

Organizations

@CausalInference

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ryan-odea/README.md

Hi there! Welcome to my Github👋

Packages

Epidemiology

  • Downloads pySEQTarget: Python equivalent of SEQTaRget
  • Downloads SEQTaRget: Observational analogs of the ITT and per-protocol effects of hypothetical treatments strategies
  • Downloads gfoRmulaICE: Parametric iterative conditional expectation G-Formula
  • Downloads pytruncreg: Estimation of one-way truncated gaussian regression models and hessian via maximum likelihood
  • Downloads pygformula: Estimation of the risk or mean of an outcome under hypothetical treatment strategies
  • Downloads Learner Latent space transfer learning methods for low-rank matrix estimation
  • Downloads learner-py: Cpython implementation for LEARNER
  • Downloads CompRiskReg: Python translation of R's cmprsk

Time Resolved Serial Crystallography

  • Downloads hatTrick: Hadamard encoding and decoding of crystallographic data
  • Downloads storageCat: Easy data archival storage to scicat
  • Downloads TRSFX: Indexing and collection of tools to analyze time resolved crystallography

Misc

  • Downloads circles: Lightweight package for drawing circular objects

Publications

  • Static Badge McGrath S, Zhu C, O'Dea R, Guo M, Duan R. LEARNER: A Transfer Learning Method for Low-Rank Matrix Estimation. [Preprint] arXiv:2412.20605
  • Static Badge Zwick H, O’Dea R, Barocas JA, et al. Health and Economic Outcomes of Addressing Encampments of Individuals Using Opioids. JAMA Netw Open. 2025;8(6):e2517095. doi:10.1001/jamanetworkopen.2025.17095
  • Static Badge Feder NM, O’Dea R, Zupa M, Luo J. Prescriptions and Reimbursement of Glucagon Products for Severe Hypoglycemia in Medicaid. JAMA. Published online January 08, 2025. doi:10.1001/jama.2024.25974
  • Static Badge Chatterjee A, Stewart EA, Assoumou SA, et al. Health and Economic Outcomes of Offering Buprenorphine in Homeless Shelters in Massachusetts. JAMA Netw Open. 2024;7(10):e2437233. doi:10.1001/jamanetworkopen.2024.37233

Presentations

  • Static Badge February 2026 at ESRF (European Synchrotron Radiation Facility). Signal recovery of BacterioRhodopsin using the Hadamard Transform on detector signals.
  • Static Badge October 2024 at INHSU (International Network on Health and Hepatitis in Substance Users). Estimation of Opioid Use Disorder Prevalence Under Unique Data Scenarios: A Simulation Study
  • Static Badge May 2024 at SGIM (Society of General Internal Medicine). Utilization and Reimbursement of Glucagon Products for Severe Hypoglycemia in Medicaid: 2012-2022

Teaching

  • Static Badge Teaching Fellow with Harvard University: High Performance Computing

Gallery Showcases

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  1. SyndemicsLab/PHD SyndemicsLab/PHD Public

    MA Dept. of Public Health scripts to establish a cohort of people who use opioids and extract a time series for their MOUD, Incarcerations, and Overdoses stratified by age group, sex, and race

    SAS 3 4

  2. CausalInference/pytruncreg CausalInference/pytruncreg Public

    Estimation of Gaussian Truncated Regression Models

    Python 2

  3. CausalInference/pygformula CausalInference/pygformula Public

    The pygformula implements the parametric g-formula in Python. The parametric g-formula (Robins, 1986) uses longitudinal data with time-varying treatments and confounders to estimate the risk or mea…

    Python 32 5

  4. CausalInference/gfoRmulaICE CausalInference/gfoRmulaICE Public

    Implements iterative conditional expectation (ICE) estimators of the plug-in g-formula

    R 9 4

  5. stmcg/learner stmcg/learner Public

    Latent Space-Based Transfer Learning

    R 1 1

  6. pylearner pylearner Public

    Python implementation of Latent Space-Based Transfer Learning

    C++ 1