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Rat Genome Database

7 followers
rgd.web@mcw.edu

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rgd-core-library rgd-core-library Public

Domain layer and shared components

Java
rgd-web-application rgd-web-application Public

Code used by the RGD web site and tools

JavaScript 2
rgd-web-services rgd-web-services Public

Swagger implementation

Java
rgd-annotation-files rgd-annotation-files Public

GO annotation files in GAF, GPAD and GPI format

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Showing 10 of 155 repositories

update-objects-in-full-annot-pipeline Public
Update names and symbols of genes/strains/qtls/variants in FULL_ANNOT, to keep them in sync with tables GENES, STRAINS, QTLS, VARIANTS

rat-genome-database/update-objects-in-full-annot-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 15, 2026
transitive-ortholog-pipeline Public
Generate transitive orthologs for all species based on HUMAN orthologs.

rat-genome-database/transitive-ortholog-pipeline’s past year of commit activity

Java 2 GPL-3.0 1 0 0 Updated Jun 15, 2026
elastic-search-indexer-pipeline Public
Pipeline to create elastic search indexes.

rat-genome-database/elastic-search-indexer-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 15, 2026
marker-load-pipeline Public
Load the marker data for new assembly

rat-genome-database/marker-load-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 15, 2026
biocyc-pipeline Public

rat-genome-database/biocyc-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 15, 2026
mouse-disease-annotation-pipeline Public
Import disease annotations from MGI.

rat-genome-database/mouse-disease-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 15, 2026
phenotype-annotation-pipeline Public
Phenotype annotation pipeline, for mouse and human genes.

rat-genome-database/phenotype-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 15, 2026
qtl-rso-annotation-pipeline Public

rat-genome-database/qtl-rso-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 15, 2026
strain-rso-annotation-pipeline Public
QC utils for phenominer data: strain ontology

rat-genome-database/strain-rso-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 15, 2026
ontology-load-pipeline Public
Load all ontologies used by RGD.

rat-genome-database/ontology-load-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 15, 2026

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