Closes #145 — Add PP domain example using {aNCA}#161
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- Add sdtm/pp.qmd: NCA workflow from ADNCA to CDISC PP using {aNCA}
- Add PP entry to sdtm/index.qmd under Findings
Contributor
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The website is available at https://pharmaverse.github.io/examples/145-add-anca-example-to-interactive-page. |
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@bundfussr I gave you admin access in case you need to update anything for branch-preview |
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Pull Request
Adds a Pharmacokinetic Parameters (PP) domain example under SDTM → Findings, showing how to produce a CDISC-compliant PP dataset from ADNCA data using
aNCA.The example walks through the full NCA scripting workflow:
Known limitations / points for review
The current CRAN version of the App does not have these features available. In any case, during the intro/installation this is specified for the readers so they can get the GitHub-dev version for now.
All code chunks use eval=FALSE — {aNCA} is not a dependency of this repo, so nothing executes during the Quarto build. This means no rendered output tables appear on the page (unlike DM/AE/VS which use print_df() to show live data). If we want rendered output, aNCA would need to be added to DESCRIPTION Imports.
No companion .R file — The other SDTM examples have a .R script alongside the .qmd (generated via knitr::purl()). Since all chunks are eval=FALSE, purl would produce a file with only comments. I can add one manually if preferred.
Spellcheck may flag new words — Terms like PKNCA, PKNCAdata, PPTESTCD, PPSTRESU, etc. may need to be added to inst/WORDLIST.
Style check — The styler CI job may flag formatting in the R code blocks. Since the chunks don't execute, styler may not pick them up, but worth verifying.
Closes #<insert_issue_number>at the beginning of your PR title. Use the Edit button in the top-right if you need to update.DESCRIPTIONfile.DESCRIPTIONfile'sImportssection.sdtm/index.qmd,adam/index.qmd,tlg/index.qmd).By default, a temporary website with the content of the PR is created. To avoid this add
[skip website]to the title of the PR.