Repositories list

• biomarkerPanels

  Public
  Multi-Objective Optimization

  R

  •00 forks•00 stars•22 issues•11 pull request•Updated Apr 15, 2026Apr 15, 2026

• lisaClust

  Public
  R

  •11 fork•33 stars•88 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• wSIR_2024

  Public
  Analysis scripts for Max's wSIR project

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• BenchHub

  Public
  R

  •

  Other

  •00 forks•00 stars•55 issues•00 pull requests•Updated Apr 12, 2026Apr 12, 2026

• CCIDeconv

  Public
  Subcellular CCI Deconvolution

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• iri-drug-repurposing

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 28, 2026Mar 28, 2026

• iDAS

  Public
  Interpretable Differential Abundance signature

  differential-expressionsinglecellidas+ 1

  differential-expressionsinglecellidasdifferential-abundance

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2026Mar 18, 2026

• wSIR

  Public
  Weighted Sliced Inverse Regression for spatial omics data analysis

  R

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 5, 2026Mar 5, 2026

• spicyR

  Public
  R

  •55 forks•1111 stars•1414 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• soft-tissue-sarcoma-project-pbmc-scRNAseq

  Public
  R code for the analysis in soft tissue sarcoma pbmc scRNAseq project

  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 9, 2026Feb 9, 2026

• clustSIGNAL

  Public
  clustering of Spatially Informed Gene expression with Neighbourhood Adapted Learning

  R

  •00 forks•66 stars•00 issues•00 pull requests•Updated Feb 9, 2026Feb 9, 2026

• scFeatures

  Public
  R

  •11 fork•1414 stars•1010 issues•00 pull requests•Updated Jan 23, 2026Jan 23, 2026

• simKAP

  Public
  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 19, 2026Jan 19, 2026

• Hydra

  Public
  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jan 14, 2026Jan 14, 2026

• scHOTTER

  Public
  scHOTTER package

  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 8, 2026Jan 8, 2026

• Statial

  Public
  rsingle-cell

  rsingle-cell

  R

  •11 fork•66 stars•77 issues•11 pull request•Updated Dec 15, 2025Dec 15, 2025

• ClassifyR

  Public
  A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing

  R

  •33 forks•55 stars•33 issues•00 pull requests•Updated Dec 2, 2025Dec 2, 2025

• scdneySpatial_ABACBS2025

  Public
  scdney spatial workshop for ABACBS 2025

  HTML

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 25, 2025Nov 25, 2025

• benchmarkinsights_ABACBS2025

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 25, 2025Nov 25, 2025

• StabMap2

  Public
  StabMap2 Package

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2025Nov 6, 2025

• 2025_NUS_Workshop

  Public
  HTML

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 30, 2025Oct 30, 2025

• llm-bio-reports

  Public
  LLM-Bio-Reports

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 18, 2025Oct 18, 2025

• scdney

  Public
  TeX

  •

  MIT License

  •00 forks•1010 stars•22 issues•00 pull requests•Updated Oct 14, 2025Oct 14, 2025

• Melanoma_neoadjuvant_Olink

  Public
  R code for the analysis of serum proteomics data (Olink) from stage III melanoma patients treated with neoadjuvant immunotherapy

  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 10, 2025Oct 10, 2025

• GBCC2025_spatial_workshop

  Public
  Dockerfile

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 7, 2025Oct 7, 2025

• spicyWorkflow

  Public
  Perform spatial analysis of in situ cytometry data in R

  spatial-statistics

  spatial-statistics

  R

  •

  GNU General Public License v3.0

  •00 forks•55 stars•77 issues•00 pull requests•Updated Oct 1, 2025Oct 1, 2025

• ClustSIGNAL_analysis2025

  Public
  ClustSIGNAL simulation, benchmarking, and real-world data analysis.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2025Sep 30, 2025

• GHIST

  Public
  Python

  •

  GNU General Public License v3.0

  •88 forks•6969 stars•1111 issues•00 pull requests•Updated Sep 16, 2025Sep 16, 2025

• StabMap2_Analysis

  Public
  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 11, 2025Sep 11, 2025

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 23, 2025Aug 23, 2025