RashikaAgarwal_Honours_2025

Adrien's data and code were too big to push so here are the links to both

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
Figures		Figures
R		R
full_mechano_gene_expression		full_mechano_gene_expression
simulated_data		simulated_data
.gitignore		.gitignore
Adrien_functions.R		Adrien_functions.R
Foscttm_results.RData		Foscttm_results.RData
Honours.Rproj		Honours.Rproj
NEW_Foscttm_results.RData		NEW_Foscttm_results.RData
README.md		README.md
case_study.qmd		case_study.qmd
cells.txt		cells.txt
data_exploration.html		data_exploration.html
data_exploration.qmd		data_exploration.qmd
dimension_reduction.ipynb		dimension_reduction.ipynb
environment.yml		environment.yml
genes.txt		genes.txt
loop_log.txt		loop_log.txt
mat1_counts.mtx		mat1_counts.mtx
mechano_fr.qmd		mechano_fr.qmd
pbmc_analysis.qmd		pbmc_analysis.qmd
pbmc_clean.html		pbmc_clean.html
pbmc_clear_explor.qmd		pbmc_clear_explor.qmd
pbmc_clear_explor.rmarkdown		pbmc_clear_explor.rmarkdown
pbmc_data.qmd		pbmc_data.qmd
pbmc_loops.qmd		pbmc_loops.qmd
rna_sce.RData		rna_sce.RData
simple_vae.html		simple_vae.html
simple_vae.qmd		simple_vae.qmd
simulation.html		simulation.html
simulation.qmd		simulation.qmd
umaps.png		umaps.png

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