Refactoring of lib.fileio.auto_open function to work with subprocess (#266)#267
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agalitsyna merged 15 commits intoopen2c:masterfrom Jun 19, 2025
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Refactoring of lib.fileio.auto_open function to work with subprocess (#266)#267agalitsyna merged 15 commits intoopen2c:masterfrom
agalitsyna merged 15 commits intoopen2c:masterfrom
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removing the global definition of loggers to satisfy latest flake8 update
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Comments from 26 May 2025 Open2C meeting. @golobor @agalitsyna @Phlya
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…ngs example tested and vis improved.
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…ces updated, OSF download instead of obscure file name.
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Checked backwards compatibility on (1) sample distiller-nf, (2) tests, (3) example notebooks.
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Introduced the CommandFormatter interface, encapsulating file operations and validations.
Added standard CLI response outputs to enhance user interaction.
MODES_TO_FILES_PRESET: format keys with values as lists of possible operation modes (read, write, append).
COMMANDS: format and mode keys with values as dictionaries containing:
tool: the tool's presence is verified in the system.
command: a command formatted for substituting the number of available processors (nproc).
This structure streamlines adding new formats without altering existing code.
Added capabilities for handling binary files.
This feature is not currently utilized but provides flexibility for future enhancements.
Transitioned to using subprocess for file operations, improving compatibility and performance.
P.S. The function signatures and responses of auto_open remain unchanged, ensuring backward compatibility. However, the implementation using the CommandFormatter class offers a more convenient and versatile approach, enhancing code maintainability and scalability.