Skip to content
@navis-org

NAVis

Tools for Neuron Analysis & Visualization
README.md

We make tools for processing and analysing of neurobiological data.

Pinned Loading

  1. navis navis Public

    Python library for analysis of neuroanatomical data.

    Python 108 35

  2. pymaid pymaid Public

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    Python 23 11

  3. skeletor skeletor Public

    Extraction of 3D skeletons from meshes.

    Python 251 29

  4. fafbseg-py fafbseg-py Public

    Tools to work with the FlyWire connectome. Fully interoperable with navis.

    Python 19 8

  5. navis-flybrains navis-flybrains Public

    Transforms for navis that enable mapping between different Drosophila template brains.

    Jupyter Notebook 16 3

  6. fastcore fastcore Public

    [WIP] Fast core functions for navis re-implemented in Cython.

    Jupyter Notebook 1 2

Repositories

Showing 10 of 17 repositories
  • navis Public

    Python library for analysis of neuroanatomical data.

    navis-org/navis’s past year of commit activity
    Python 108 GPL-3.0 35 32 14 Updated Feb 9, 2026
  • navis-flybrains Public

    Transforms for navis that enable mapping between different Drosophila template brains.

    navis-org/navis-flybrains’s past year of commit activity
    Jupyter Notebook 16 GPL-3.0 3 5 2 Updated Jan 28, 2026
  • fafbseg-py Public

    Tools to work with the FlyWire connectome. Fully interoperable with navis.

    navis-org/fafbseg-py’s past year of commit activity
    Python 19 GPL-3.0 8 5 2 Updated Jan 28, 2026
  • octarine-navis-plugin Public

    Octarine plugin to visualize navis objects

    navis-org/octarine-navis-plugin’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 13, 2026
  • navis-mousebrains Public

    Template brains and transforms for mouse brains

    navis-org/navis-mousebrains’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Jan 4, 2026
  • skeletor Public

    Extraction of 3D skeletons from meshes.

    navis-org/skeletor’s past year of commit activity
    Python 251 GPL-3.0 29 31 1 Updated Dec 2, 2025
  • sparse-cubes Public

    Marching cubes for sparse matrices

    navis-org/sparse-cubes’s past year of commit activity
    Python 23 GPL-3.0 1 1 0 Updated Nov 5, 2025
  • pymaid Public

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    navis-org/pymaid’s past year of commit activity
    Python 23 GPL-3.0 11 36 3 Updated Mar 19, 2025
  • neuropython2024 Public

    Documentation and Material for the 2024 NeuroPython Workshop

    navis-org/neuropython2024’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Sep 24, 2024
  • fastcore Public

    [WIP] Fast core functions for navis re-implemented in Cython.

    navis-org/fastcore’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 2 3 1 Updated Sep 16, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.