Neoantigen Merge to get some neoantigen branch updates#244

Merged

nikhil merged 20 commits intodevelopfrom

May 7, 2026

Commits on Feb 9, 2026

Merge pull request #233 from mskcc-omics-workflows/develop
nikhil
authored

Commits on Feb 13, 2026

Fix NF 25.04.0 heredoc compat: use tabs in END_VERSIONS blocks

johnoooh
and
claude
committed

Commits on Feb 19, 2026

Commits on Feb 20, 2026

Fix PR #87 review issues: Python bug fixes and .nf module safety

johnoooh
and
claude
committed
Revert set_model and epitope_dist logic changes in EpitopeDistance.py

johnoooh
and
claude
committed
Revert all EpitopeDistance.py changes

johnoooh
and
claude
committed

Commits on Apr 23, 2026

Commits on Apr 24, 2026

Some linting fixes
nikhil
committed

Commits on Apr 30, 2026

Fix frameshift identifier encoding to use alphanumeric-only codes
johnoooh
committed

Commits on May 6, 2026

Merge pull request #240 from mskcc-omics-workflows/fix/pr87-review
johnoooh
authored

Commits on May 7, 2026

Updated snap test files
nikhil
committed