dbChecker

dbChecker is a tool to check if the Annovar database format is correct and create an index file for Annovar to use.

Usage

usage: ./dbChecker [options] ...

Options

• -d, --db_path <string>: Annovar database with path (string [=])
• -b, --bin <int>: Number of bin using in Annovar database, default is 1000 (int [=1000])
• -?, --help: Print this message

Outputs

• <db_path>_confirm: A cleaned version of the input database with correct format.
• <db_path>_confirm.idx: An index file for efficient querying in Annovar.