Somewhat hierarchical platforms with meanings pointing to EFO#32
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RobertJCarroll merged 4 commits intod3b-2559-add-files-and-assayfrom Apr 17, 2026
Merged
Somewhat hierarchical platforms with meanings pointing to EFO#32RobertJCarroll merged 4 commits intod3b-2559-add-files-and-assayfrom
RobertJCarroll merged 4 commits intod3b-2559-add-files-and-assayfrom
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Linting requires a specific EFO URI: > warning Schema maps prefix 'EFO' to namespace 'http://www.ebi.ac.uk/efo' instead of namespace 'http://identifiers.org/efo/' (canonical_prefixes)
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I'm not sure this is the right enumeration approach, but I'm going to merge this in while we consider. |
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Just an idea that might be worth considering. Organizing the various illumina platforms under "illumina" and pacbio/ont under "long_read" with "meaning" pointing to a public ontology (I chose EFO since it seemed to have all of the things I searched for at bioportal). The actual machines were enumerated by gemini, and I didn't verify all of them, just the handful I added meanings to.