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  1. FANC_auto_recon FANC_auto_recon Public

    Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset

    Python 15 10

  2. raygun raygun Public

    An image enhancement and segmentation pipeline for generating connectomic reconstructions from X-ray holographic nanotomography, using CycleGANs, Local Shape Descriptors, and Mutex Watershed. Built…

    Python 4 1

  3. cb2_project_analysis cb2_project_analysis Public

    Analysis source code for CB2 project

    Jupyter Notebook 4 2

  4. BANC-project BANC-project Public

    Jupyter Notebook 4

  5. GridTapeStage GridTapeStage Public

    GridTape TEM imaging stage

    Python 3 3

  6. autoseg autoseg Public

    Automated deep learning segmentation for large-scale biological datasets.

    Python 3 1

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  • dorsalhorn-ml Public

    Deep learning model for predicting sensory neuron cell types in the mouse dorsal horn.

    htem/dorsalhorn-ml’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Mar 6, 2026
  • faab Public
    htem/faab’s past year of commit activity
    0 0 0 0 Updated Feb 27, 2026
  • BANC-project Public
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    Jupyter Notebook 4 GPL-3.0 0 0 0 Updated Feb 24, 2026
  • LC14 Public

    Analysis on LC14 to DN connectivity

    htem/LC14’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 23, 2025
  • FANC_auto_recon Public

    Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset

    htem/FANC_auto_recon’s past year of commit activity
    Python 15 GPL-3.0 10 0 0 Updated Dec 5, 2025
  • aedes_public Public

    license

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    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Sep 4, 2025
  • synister_banc Public

    Neurotransmitter predictions for BANC

    htem/synister_banc’s past year of commit activity
    Python 0 0 0 0 Updated Jul 29, 2025
  • run_elastix Public

    A pipeline for running elastix to register two 3D image volumes

    htem/run_elastix’s past year of commit activity
    Shell 1 GPL-3.0 0 0 0 Updated Mar 25, 2025
  • itfbarcode Public
    htem/itfbarcode’s past year of commit activity
    Python 1 5 1 0 Updated Dec 4, 2024
  • cb2_project_analysis Public

    Analysis source code for CB2 project

    htem/cb2_project_analysis’s past year of commit activity
    Jupyter Notebook 4 MIT 2 1 0 Updated Oct 4, 2024

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