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@dependabot dependabot bot commented on behalf of github Feb 1, 2026

Bumps the uv group with 9 updates:

Package From To
bidsschematools 1.1.3 1.1.6
nibabel 5.3.2 5.3.3
orjson 3.11.4 3.11.6
universal-pathlib 0.3.6 0.3.9
typer 0.20.0 0.21.1
ipython 8.37.0 8.38.0
pytest 9.0.1 9.0.2
datalad 1.2.3 1.3.0
mypy 1.18.2 1.19.1

Updates bidsschematools from 1.1.3 to 1.1.6

Commits
  • 5695e5c chore: Bump schema package to 1.1.6
  • 7bd29bf fix(schema): Check that entities.space is not null
  • b1e4d4e [FIX] Check PET series length and per-frame metadata
  • 56700b7 chore: Bump schema package to 1.1.6-dev
  • f9dda03 chore: Bump schema package to 1.1.5
  • 5e4abaa type: Avoid breaking third-party autodoc generation (#2303)
  • ca3ccde chore(ci): Avoid modifying package-lock.json
  • 83f8940 chore: Bump schema package to 1.1.5-dev
  • 5acf808 chore: Bump schema package to 1.1.4
  • 40108fb test(bst): Narrow glossary validation test (#2284)
  • Additional commits viewable in compare view

Updates nibabel from 5.3.2 to 5.3.3

Release notes

Sourced from nibabel's releases.

5.3.3

DOI

Release notes

Bug-fix release in the 5.3.x series.

Bug fixes

  • Fix frame order for single-frame DICOM files (pr/1387) (Brendan Moloney, reviewed by CM)
  • Replace :class:dict literal with :class:set in test. (pr/1382) (CM)

Full Changelog: nipy/nibabel@5.3.2...5.3.3

Changelog

Sourced from nibabel's changelog.

5.3.3 (Friday 5 December 2025)

Bug-fix release in the 5.3.x series.

Bug fixes

  • Fix frame order for single-frame DICOM files (pr/1387) (Brendan Moloney, reviewed by CM)
  • Replace :class:dict literal with :class:set in test. (pr/1382) (CM)
Commits

Updates orjson from 3.11.4 to 3.11.6

Release notes

Sourced from orjson's releases.

3.11.6

Changed

  • orjson now includes code licensed under the Mozilla Public License 2.0 (MPL-2.0).
  • Drop support for Python 3.9.
  • ABI compatibility with CPython 3.15 alpha 5.
  • Build now depends on Rust 1.89 or later instead of 1.85.

Fixed

  • Fix sporadic crash serializing deeply nested list of dict.

3.11.5

Changed

  • Show simple error message instead of traceback when attempting to build on unsupported Python versions.
Changelog

Sourced from orjson's changelog.

3.11.6 - 2026-01-29

Changed

  • orjson now includes code licensed under the Mozilla Public License 2.0 (MPL-2.0).
  • Drop support for Python 3.9.
  • ABI compatibility with CPython 3.15 alpha 5.
  • Build now depends on Rust 1.89 or later instead of 1.85.

Fixed

  • Fix sporadic crash serializing deeply nested list of dict.

3.11.5 - 2025-12-06

Changed

  • Show simple error message instead of traceback when attempting to build on unsupported Python versions.
Commits

Updates universal-pathlib from 0.3.6 to 0.3.9

Release notes

Sourced from universal-pathlib's releases.

v0.3.9

What's Changed

Full Changelog: fsspec/universal_pathlib@v0.3.8...v0.3.9

v0.3.8

What's Changed

New Contributors

Full Changelog: fsspec/universal_pathlib@v0.3.7...v0.3.8

v0.3.7

What's Changed

... (truncated)

Changelog

Sourced from universal-pathlib's changelog.

[0.3.9] - 2026-01-31

Fixed

  • upath.core: raise TypeError if using subclass directly with wrong protocol (#541)
  • upath.core: (backcompat) TypeError on protocol incompatibility (#540)
  • upath.extensions: Pydantic serialize ProxyUPath (#538)

Changed

  • upath: updated flavours (#512)

[0.3.8] - 2026-01-11

Added

  • tests: add missing pathlib abc tests (#511)
  • tests: split base test cases into joinable/readable/writable tests (#507)
  • docs: describe UPath/s3fs behavior with is_dir() (#503)

Fixed

  • upath.implementations.cloud: fix S3Path copy to local with name collision of file/dir (#533)
  • upath.core: fix behaviour of UPath.parent and UPath.parents (#529)
  • upath.implementations.github: adjust GitHubPath error reporting (#522)
  • upath.implementations.cloud: fix error handling on HfPath (#521)
  • upath.implementations.zip: disable write mode in universal-pathlib (#520)
  • upath.implementations.tar: fix error handling for write methods (#519)
  • upath.implementations.http: fix HTTPPath error handling for unsupported methods (#518)
  • upath.implementations.data: fix DataPath error handling for unsupported methods (#517)
  • upath.core: fix touch() method (#515)
  • upath.extensions: fix is_relative_to() for extensions (#510)
  • upath.extensions: fix error behavior for hardlink_to() backport and symlink_to() (#508)
  • upath: fix iterdir() behaviour when raising NotADirectoryError for all UPath subclasses (#506)
  • tests: xfail on name resolution error in github suite (#523)
  • tests: fix GitHub tests without a network connection (#509)

Changed

  • upath: adjust behavior of UPath.copy() and UPath.copy_into() with str and Path targets (#530)
  • upath.core: handover cached fs instances in with_segments() (#516)
  • tests: split test suite according to abcs and cleanup tests (#513)
  • tests: remove two unused helper functions introduced in #492 (#505)
  • ci: do not hardcode Python executable name (#504)
  • ci: updated development dependencies (#501)

[0.3.7] - 2025-12-03

Added

  • upath.implementations.ftp: added FTPPath support (#485)
  • tests: added comprehensive warning checks in test suite (#487)
  • tests: added xfail handling for network connectivity issues (#492)

Fixed

  • upath: fixed trailing slash behavior for cloud paths (#488)

... (truncated)

Commits
  • 3a0df86 cut release 0.3.9 (#543)
  • e44a8c7 Raise if using subclass directly with wrong protocol (#541)
  • 640ca44 upath._flavour_sources: bump the pip-dependencies group with 2 updates (#512)
  • 977544a upath.core: (backcompat) TypeError on protocol incompatibility (#540)
  • bc25303 Pydantic serialize ProxyUPath (#538)
  • 89d2e6d cut release 0.3.8 (#534)
  • c4c1fe3 Fix S3Path copy to Local: name collision of file / dir (#533)
  • 9ceaf2f Adjust behavior of UPath.copy and UPath.copy_into with str and Path targets (...
  • 4ff77c7 Fix behaviour of UPath.parent and UPath.parents (#529)
  • fb7703d tests: xfail on name resolution error in github suite (#523)
  • Additional commits viewable in compare view

Updates typer from 0.20.0 to 0.21.1

Release notes

Sourced from typer's releases.

0.21.1

Fixes

  • 🐛 Fix escaping in help text when rich is installed but not used. PR #1089 by @​svlandeg.

Internal

0.21.0

Breaking Changes

Docs

Internal

0.20.1

Features

  • ✨ Add support for standard tracebacks via the env TYPER_STANDARD_TRACEBACK. PR #1299 by @​colin-nolan.

Fixes

  • 🐛 Ensure that options_metavar is passed through correctly. PR #816 by @​gar1t.
  • 🐛 Ensure an optional argument is shown in brackets, even when metavar is set. PR #1409 by @​svlandeg.
  • 🐛 Ensure that the default rich_markup_mode is interpreted correctly. PR #1304 by @​svlandeg.

... (truncated)

Changelog

Sourced from typer's changelog.

0.21.1

Fixes

  • 🐛 Fix escaping in help text when rich is installed but not used. PR #1089 by @​svlandeg.

Internal

0.21.0

Breaking Changes

Docs

Internal

0.20.1

Features

  • ✨ Add support for standard tracebacks via the env TYPER_STANDARD_TRACEBACK. PR #1299 by @​colin-nolan.

Fixes

  • 🐛 Ensure that options_metavar is passed through correctly. PR #816 by @​gar1t.

... (truncated)

Commits

Updates ipython from 8.37.0 to 8.38.0

Commits

Updates pytest from 9.0.1 to 9.0.2

Release notes

Sourced from pytest's releases.

9.0.2

pytest 9.0.2 (2025-12-06)

Bug fixes

  • #13896: The terminal progress feature added in pytest 9.0.0 has been disabled by default, except on Windows, due to compatibility issues with some terminal emulators.

    You may enable it again by passing -p terminalprogress. We may enable it by default again once compatibility improves in the future.

    Additionally, when the environment variable TERM is dumb, the escape codes are no longer emitted, even if the plugin is enabled.

  • #13904: Fixed the TOML type of the tmp_path_retention_count settings in the API reference from number to string.

  • #13946: The private config.inicfg attribute was changed in a breaking manner in pytest 9.0.0. Due to its usage in the ecosystem, it is now restored to working order using a compatibility shim. It will be deprecated in pytest 9.1 and removed in pytest 10.

  • #13965: Fixed quadratic-time behavior when handling unittest subtests in Python 3.10.

Improved documentation

  • #4492: The API Reference now contains cross-reference-able documentation of pytest's command-line flags <command-line-flags>.
Commits
  • 3d10b51 Prepare release version 9.0.2
  • 188750b Merge pull request #14030 from pytest-dev/patchback/backports/9.0.x/1e4b01d1f...
  • b7d7bef Merge pull request #14014 from bluetech/compat-note
  • bd08e85 Merge pull request #14013 from pytest-dev/patchback/backports/9.0.x/922b60377...
  • bc78386 Add CLI options reference documentation (#13930)
  • 5a4e398 Fix docs typo (#14005) (#14008)
  • d7ae6df Merge pull request #14006 from pytest-dev/maintenance/update-plugin-list-tmpl...
  • 556f6a2 pre-commit: fix rst-lint after new release (#13999) (#14001)
  • c60fbe6 Fix quadratic-time behavior when handling unittest subtests in Python 3.10 ...
  • 73d9b01 Merge pull request #13995 from nicoddemus/patchback/backports/9.0.x/1b5200c0f...
  • Additional commits viewable in compare view

Updates datalad from 1.2.3 to 1.3.0

Release notes

Sourced from datalad's releases.

1.3.0

🚀 Enhancements and New Features

🐛 Bug Fixes

📝 Documentation

🧪 Tests

Changelog

Sourced from datalad's changelog.

1.3.0 (2026-01-17)

🚀 Enhancements and New Features

🐛 Bug Fixes

📝 Documentation

🧪 Tests

Commits
  • 68f1050 [skip ci] Update docs/source/changelog.rst and CITATION.cff
  • 3f71016 [skip ci] Update CHANGELOG
  • 8432e71 Merge pull request #7791 from datalad/master
  • c5f864c Merge pull request #7790 from datalad/bf-coverage
  • a737c33 BF: Pin git-annex to 10.20251114 for macOS Monterey compatibility
  • d68da5f BF: Exclude coverage 7.13.1 due to ConfigError with '..' in config paths on m...
  • be057b3 Merge remote-tracking branch 'origin/maint'
  • 7e8a4e9 Merge pull request #7788 from datalad/bf-sphinx
  • 3e20724 Merge pull request #7789 from datalad/bf-retry-download-url
  • 44546d1 BF: Add retry logic for 5xx server errors in HTTP downloads
  • Additional commits viewable in compare view

Updates mypy from 1.18.2 to 1.19.1

Changelog

Sourced from mypy's changelog.

Mypy 1.19.1

  • Fix noncommutative joins with bounded TypeVars (Shantanu, PR 20345)
  • Respect output format for cached runs by serializing raw errors in cache metas (Ivan Levkivskyi, PR 20372)
  • Allow types.NoneType in match cases (A5rocks, PR 20383)
  • Fix mypyc generator regression with empty tuple (BobTheBuidler, PR 20371)
  • Fix crash involving Unpack-ed TypeVarTuple (Shantanu, PR 20323)
  • Fix crash on star import of redefinition (Ivan Levkivskyi, PR 20333)
  • Fix crash on typevar with forward ref used in other module (Ivan Levkivskyi, PR 20334)
  • Fail with an explicit error on PyPy (Ivan Levkivskyi, PR 20389)

Acknowledgements

Thanks to all mypy contributors who contributed to this release:

  • A5rocks
  • BobTheBuidler
  • bzoracler
  • Chainfire
  • Christoph Tyralla
  • David Foster
  • Frank Dana
  • Guo Ci
  • iap
  • Ivan Levkivskyi
  • James Hilton-Balfe
  • jhance
  • Joren Hammudoglu
  • Jukka Lehtosalo
  • KarelKenens
  • Kevin Kannammalil
  • Marc Mueller
  • Michael Carlstrom
  • Michael J. Sullivan
  • Piotr Sawicki
  • Randolf Scholz
  • Shantanu
  • Sigve Sebastian Farstad
  • sobolevn
  • Stanislav Terliakov
  • Stephen Morton
  • Theodore Ando
  • Thiago J. Barbalho
  • wyattscarpenter

I’d also like to thank my employer, Dropbox, for supporting mypy development.

Mypy 1.18

We’ve just uploaded mypy 1.18.1 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features, performance

... (truncated)

Commits

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Bumps the uv group with 9 updates:

| Package | From | To |
| --- | --- | --- |
| [bidsschematools](https://github.com/bids-standard/bids-specification) | `1.1.3` | `1.1.6` |
| [nibabel](https://github.com/nipy/nibabel) | `5.3.2` | `5.3.3` |
| [orjson](https://github.com/ijl/orjson) | `3.11.4` | `3.11.6` |
| [universal-pathlib](https://github.com/fsspec/universal_pathlib) | `0.3.6` | `0.3.9` |
| [typer](https://github.com/fastapi/typer) | `0.20.0` | `0.21.1` |
| [ipython](https://github.com/ipython/ipython) | `8.37.0` | `8.38.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `9.0.1` | `9.0.2` |
| [datalad](https://github.com/datalad/datalad) | `1.2.3` | `1.3.0` |
| [mypy](https://github.com/python/mypy) | `1.18.2` | `1.19.1` |


Updates `bidsschematools` from 1.1.3 to 1.1.6
- [Release notes](https://github.com/bids-standard/bids-specification/releases)
- [Changelog](https://github.com/bids-standard/bids-specification/blob/master/Release_Protocol.md)
- [Commits](bids-standard/bids-specification@schema-1.1.3...schema-1.1.6)

Updates `nibabel` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/nipy/nibabel/releases)
- [Changelog](https://github.com/nipy/nibabel/blob/5.3.3/Changelog)
- [Commits](nipy/nibabel@5.3.2...5.3.3)

Updates `orjson` from 3.11.4 to 3.11.6
- [Release notes](https://github.com/ijl/orjson/releases)
- [Changelog](https://github.com/ijl/orjson/blob/master/CHANGELOG.md)
- [Commits](ijl/orjson@3.11.4...3.11.6)

Updates `universal-pathlib` from 0.3.6 to 0.3.9
- [Release notes](https://github.com/fsspec/universal_pathlib/releases)
- [Changelog](https://github.com/fsspec/universal_pathlib/blob/main/CHANGELOG.md)
- [Commits](fsspec/universal_pathlib@v0.3.6...v0.3.9)

Updates `typer` from 0.20.0 to 0.21.1
- [Release notes](https://github.com/fastapi/typer/releases)
- [Changelog](https://github.com/fastapi/typer/blob/master/docs/release-notes.md)
- [Commits](fastapi/typer@0.20.0...0.21.1)

Updates `ipython` from 8.37.0 to 8.38.0
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@8.37.0...8.38.0)

Updates `pytest` from 9.0.1 to 9.0.2
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@9.0.1...9.0.2)

Updates `datalad` from 1.2.3 to 1.3.0
- [Release notes](https://github.com/datalad/datalad/releases)
- [Changelog](https://github.com/datalad/datalad/blob/maint/CHANGELOG.md)
- [Commits](datalad/datalad@1.2.3...1.3.0)

Updates `mypy` from 1.18.2 to 1.19.1
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.18.2...v1.19.1)

---
updated-dependencies:
- dependency-name: bidsschematools
  dependency-version: 1.1.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: nibabel
  dependency-version: 5.3.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: orjson
  dependency-version: 3.11.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: universal-pathlib
  dependency-version: 0.3.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: typer
  dependency-version: 0.21.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: ipython
  dependency-version: 8.38.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: pytest
  dependency-version: 9.0.2
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: datalad
  dependency-version: 1.3.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: mypy
  dependency-version: 1.19.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Feb 1, 2026
@effigies effigies merged commit 338f29d into main Feb 1, 2026
57 checks passed
@effigies effigies deleted the dependabot/uv/uv-1cd7b9e4a6 branch February 1, 2026 01:26
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