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1. epinowcast/epinowcast epinowcast/epinowcast Public

   A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation, delay estimation, and forecasting from data subject to rep…

   R 63 21

2. methodologies-npi-effects methodologies-npi-effects Public

   The methodologies to assess the effects of non-pharmaceutical interventions during COVID-19: a systematic review

   6

3. EpiSewer EpiSewer Public

   An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.

   R 23 2

4. interval-scoring interval-scoring Public

   This repository contains python implementations of scoring rules for forecasts provided in a prediction interval format.

   Jupyter Notebook 11 3

5. gnn-community-detection gnn-community-detection Public

   Graph Neural Networks for Community Detection

   Jupyter Notebook 66 14

6. epiforecasts/EpiNow2 epiforecasts/EpiNow2 Public

   Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

   R 133 38