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Hotfix/v2.7.4 #124

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1b5ce4d
Fixed error double/triple boxes in dIEM plots
ALuesink Jun 12, 2026
92b4cce
Fixed the unit tests for changed code
ALuesink Jun 12, 2026
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12 changes: 9 additions & 3 deletions DIMS/export/generate_violin_plots_functions.R
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Original file line number Diff line number Diff line change
Expand Up @@ -713,9 +713,15 @@ create_violin_plot <- function(metab_zscores_df, patient_zscore_df, sub_perpage,
colors_plot <- c("#22E4AC", "#00B0F0", "#504FFF", "#A704FD", "#F36265", "#DA0641")

y_order <- attr(metab_zscores_df, "y_order")
metab_zscores_df$HMDB_name <- rev(factor(metab_zscores_df$HMDB_name, levels = rev(y_order)))
patient_zscore_df$HMDB_name <- rev(factor(patient_zscore_df$HMDB_name, levels = rev(y_order)))


metab_zscores_df <- metab_zscores_df %>%
mutate(HMDB_name = factor(HMDB_name, levels = y_order)) %>%
arrange(HMDB_name)

patient_zscore_df <- patient_zscore_df %>%
mutate(HMDB_name = factor(HMDB_name, levels = y_order)) %>%
arrange(HMDB_name)

ggplot_object <- ggplot(metab_zscores_df, aes(x = Z_score, y = HMDB_name)) +
# Make violin plots
geom_violin(scale = "width", na.rm = TRUE) +
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4 changes: 2 additions & 2 deletions DIMS/tests/testthat/_snaps/generate_violin_plots.md
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Expand Up @@ -4,8 +4,8 @@
content_pdf_violinplots
Output
[1] "Top deviating metabolites for patient: P2025M1\n Metabolite Z.score\n Increased\n metab1 2.45\n Decreased\n metab11 −1.51\n"
[2] " Results for patient P2025M1\n test acyl carnitines\n metab1 Z=2.34\nMetabolites\n metab3 Z=0.31\n −5 0 5 10 15 20\n Z−scores\n"
[3] " Results for patient P2025M1\n test crea gua\n metab4 Z=−0.46\nMetabolites\n metab11 Z=0.84\n −5 0 5 10 15 20\n Z−scores\n"
[2] " Results for patient P2025M1\n test acyl carnitines\n metab1 Z=0.31\nMetabolites\n metab3 Z=2.34\n −5 0 5 10 15 20\n Z−scores\n"
[3] " Results for patient P2025M1\n test crea gua\n metab4 Z=0.84\nMetabolites\n metab11 Z=−0.46\n −5 0 5 10 15 20\n Z−scores\n"
[4] " Unit test Generate Violin Plots\nUnit test Generate Violin Plots\n"

# save_prob_scores_to_excel: Saving the probability score dataframe as an Excel file
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