kegg: fetch the HMM library from the raven-toolbox v0.1.0 release#640
Merged
Conversation
getKEGGModelForOrganism downloads the concatenated KO HMM library (kegg116_<domain>.hmm.gz). Point it at the raven-toolbox v0.1.0 release, where that artefact is actually published and shared with the Python port, instead of the RAVEN v2.11.0 release (which only carries the legacy per-KO zips).
Function test results201 tests 177 ✅ 33s ⏱️ Results for commit c4c1ec7. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
getKEGGModelForOrganismdownloads the concatenated KO HMM librarykegg116_<domain>.hmm.gz(added in #630). It pointed at the RAVENv2.11.0release, which only hosts the legacy per-KO zips (
euk90_kegg116.zip,pro90_kegg116.zip) — so the download would 404.Point it at the raven-toolbox
v0.1.0release, where that artefact isactually published and SHA-pinned, and is the same file the Python port
(
raven_toolbox.data.ensure_kegg_hmm_library) consumes — one shared artefactfor both tools.