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kegg: fetch the HMM library from the raven-toolbox v0.1.0 release#640

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edkerk merged 1 commit into
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chore/kegg-artefact-url
Jun 15, 2026
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kegg: fetch the HMM library from the raven-toolbox v0.1.0 release#640
edkerk merged 1 commit into
develop3from
chore/kegg-artefact-url

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@edkerk

@edkerk edkerk commented Jun 15, 2026

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getKEGGModelForOrganism downloads the concatenated KO HMM library
kegg116_<domain>.hmm.gz (added in #630). It pointed at the RAVEN v2.11.0
release, which only hosts the legacy per-KO zips (euk90_kegg116.zip,
pro90_kegg116.zip) — so the download would 404.

Point it at the raven-toolbox v0.1.0 release, where that artefact is
actually published and SHA-pinned, and is the same file the Python port
(raven_toolbox.data.ensure_kegg_hmm_library) consumes — one shared artefact
for both tools.

getKEGGModelForOrganism downloads the concatenated KO HMM library
(kegg116_<domain>.hmm.gz). Point it at the raven-toolbox v0.1.0 release, where
that artefact is actually published and shared with the Python port, instead of
the RAVEN v2.11.0 release (which only carries the legacy per-KO zips).
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Function test results

201 tests   177 ✅  33s ⏱️
 22 suites   24 💤
  1 files      0 ❌

Results for commit c4c1ec7.

@edkerk edkerk merged commit 1cf2f66 into develop3 Jun 15, 2026
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@edkerk edkerk deleted the chore/kegg-artefact-url branch June 15, 2026 19:25
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