Phase 1: foundation, bug-fix upstream, source router (deepXIV + biomed)#1

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StartripAI merged 21 commits into

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May 1, 2026

Commits on May 1, 2026

chore: scaffold openrevise package via pyproject.toml
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chore: ignore egg-info/build/dist; expose openrevise.__version__
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refactor: move scripts/ to src/openrevise/ subpackages
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fix(refactor): correct parents[1]→parents[3] post-move; update producer_script labels
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ci: add leak-guard workflow + self-check test
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fix(leak-guard): exclude self-referential pattern files from scan
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ci(leak-guard): delegate scan to pytest; drop duplicated bash logic
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ci: add pytest workflow for py3.11/3.12; harden leak-guard permissions
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ci: consolidate leak-guard into test workflow; add concurrency/timeout/cache
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fix(housekeeping): dry-run must not mutate run-index
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test(housekeeping): cover EXPIRED_NONKEY_PURGED dry-run path
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fix(revise_docx): friendly error when DOCX missing word/footnotes.xml
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feat(gates): add ITT/mITT label-binding gate, wire into pipelines
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feat(sources): SourceRouter with source_type dispatch
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feat(sources): preprint router with deepXIV → arXiv fallback
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fix(preprint/arxiv): use https for arXiv API endpoint
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feat(sources): real PubMed/PMC/EuropePMC clients via E-utilities and REST
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docs(pubmed): clarify esearch-only scope in module docstring
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feat(sources): default_router wires preprint/biomed backends; arxiv source_ids registered
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feat(router): alias 'literature' source_type to biomed dispatch for registry compat
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docs: add Sources & backends section with deepXIV attribution
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