LinkedEarth · khider · Mar 12, 2026 · Mar 12, 2026 · Mar 12, 2026 · Mar 12, 2026
diff --git a/.github/workflows/pr-tests.yml b/.github/workflows/pr-tests.yml
@@ -11,8 +11,8 @@ jobs:
       run:
         shell: bash -l {0}
     steps:
-    - uses: actions/checkout@v3
-    - uses: conda-incubator/setup-miniconda@v2
+    - uses: actions/checkout@v4
+    - uses: conda-incubator/setup-miniconda@v3
       with:
         activate-environment: pyleo
         environment-file: environment.yml
@@ -22,7 +22,20 @@ jobs:
         conda activate pyleo
         pip install pytest-xdist nbmake
         conda list
+
     - name: Test notebooks
       run: |
         conda activate pyleo
-        pytest --nbmake -n=auto --nbmake-timeout=3600 notebooks/*ipynb
+        pytest --nbmake -v --tb=long --overwrite --nbmake-timeout=3600 notebooks/*ipynb || true
+
+    - name: Upload executed notebooks
+      if: always()
+      uses: actions/upload-artifact@v4
+      with:
+        name: executed-notebooks
+        path: notebooks/*.ipynb
+
+    - name: Check for failures
+      run: |
+        conda activate pyleo
+        pytest --nbmake -v --tb=long --nbmake-timeout=3600 notebooks/*ipynb
diff --git a/environment.yml b/environment.yml
@@ -5,15 +5,16 @@ channels:
 dependencies:
   - python==3.12
   - cartopy
-  - xarray
-  - Bottleneck
-  - dask
-  - climlab
   - pip
   - jupyter
   - jupyterlab
   - pip:
     - pangaeapy
+    - xarray
+    - climlab
+    - pooch
+    - bottleneck
+    - dask
     - git+https://github.com/LinkedEarth/Pyleoclim_util.git@master
     - git+https://github.com/LinkedEarth/pylipd.git@main
     - watermark

diff --git a/notebooks/L0_basic_MSES_manipulation.ipynb b/notebooks/L0_basic_MSES_manipulation.ipynb
diff --git a/notebooks/L0_working_with_geoseries.ipynb b/notebooks/L0_working_with_geoseries.ipynb
diff --git a/notebooks/L1_filtering_and_detrending.ipynb b/notebooks/L1_filtering_and_detrending.ipynb
diff --git a/notebooks/L1_time_semanics.ipynb b/notebooks/L1_time_semanics.ipynb
diff --git a/notebooks/L1_uniform_time_sampling.ipynb b/notebooks/L1_uniform_time_sampling.ipynb