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Atakan-Emre/README.md

Hi there, I'm Atakan Emre 👋

Software Engineering Postgraduate | AI Researcher | Open Source Contributor


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🚀 About Me

I am a dedicated Software Engineer and Postgraduate Researcher transitioning from traditional Full-Stack development to the deep tech realms of Artificial Intelligence, Bioinformatics, and Machine Learning Operations (MLOps).

Currently, I am working on my Master's thesis focusing on Cross-Modal Hybrid Benchmarks while building intelligent, local-first workflows. I thrive on bridging the gap between cutting-edge AI research and robust software engineering.

  • 🎓 Currently studying: Software Engineering (MSc), preparing for Doctoral Qualifying Exams.
  • 🔬 Research Focus: Peptide Property Prediction, Clinical Decision Support Systems (HealthTech), and RAG architectures.
  • 💻 Tech Philosophy: Deeply interested in local Large Language Model (LLM) orchestration, agentic workflows (Model Context Protocol).
  • 🏆 Open Source: Creator and maintainer of McpTestGenerator, an automated QA tool powered by MCP.
  • 🤝 Let's collaborate on: Applied AI in Healthcare, Bioinformatics Data Pipelines, and Open Source LLM Tools.

🧠 Core Expertise & Tech Stack

AI Stack

Languages & Frameworks

Tools & Infra


📂 Featured Research & Projects

Project Description Tech Stack
McpTestGenerator Standardized Test Case Generation for LLM Agents via Model Context Protocol (MCP). Bridging AI and QA (Xray/Jira). TypeScript, MCP, LLM Agents
TestGen-AI AI-Powered Test Case and Automation Generator. Streamlining software quality assurance and testing pipelines using Large Language Models. Python/TS, LLM, QA Automation
PeptiProp Deep Learning & GNN framework for accurate Peptide Property Prediction. Reranking candidates using ESM-2 embeddings. Python, PyTorch, MLX, GNN
NISTH (PostTx-Monitor) AI-Driven Post-Transplant Monitoring. End-to-end clinical decision support system for health risk analysis. TensorFlow, Next.js, Python
Academic-Incentive-RAG AI-Powered Academic Incentive Calculator using RAG. Autonomously analyzes regulations and academic CVs. LLM, LangChain, RAG, NLP

📊 GitHub Analytics

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📫 Let's Connect

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