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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 29 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 26 9

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 16 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 13 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 561 repositories
  • aind-data-upload-utils Public

    Library of utility methods to facilitate file uploads, such as partitioning directories.

    AllenNeuralDynamics/aind-data-upload-utils’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Feb 13, 2026
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity
    Python 16 MIT 13 32 1 Updated Feb 13, 2026
  • aind-hcr-data-loader Public

    Data loading for AIND HCR datasets (v1.0)

    AllenNeuralDynamics/aind-hcr-data-loader’s past year of commit activity
    Jupyter Notebook 0 MIT 0 2 0 Updated Feb 13, 2026
  • Rhapso Public

    An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.

    AllenNeuralDynamics/Rhapso’s past year of commit activity
    Jupyter Notebook 6 MIT 0 7 7 Updated Feb 13, 2026
  • aind-ephys-portal Public

    SpikeInterface GUI Portal

    AllenNeuralDynamics/aind-ephys-portal’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 13, 2026
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 29 MIT 19 48 6 Updated Feb 13, 2026
  • harp.device.delphi-controller Public Forked from AllenNeuralDynamics/harp.device.valve-controller

    0368: a 16-channel valve controller for delphi control

    AllenNeuralDynamics/harp.device.delphi-controller’s past year of commit activity
    C++ 0 1 7 1 Updated Feb 13, 2026
  • package-brain-atlas-assets Public

    Reorganize various brain atlas data assets into a standard organization and metadata convention.

    AllenNeuralDynamics/package-brain-atlas-assets’s past year of commit activity
    Python 0 MIT 0 5 4 Updated Feb 13, 2026
  • nmcp-client Public
    AllenNeuralDynamics/nmcp-client’s past year of commit activity
    TypeScript 0 0 5 0 Updated Feb 13, 2026
  • nmcp-deploy Public
    AllenNeuralDynamics/nmcp-deploy’s past year of commit activity
    Shell 0 0 0 0 Updated Feb 13, 2026