I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.
- Adamtaranto/teloclip - A tool for the recovery of unassembled telomeres from soft-clipped read alignments. (today)
- Adamtaranto/TIRmite - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features. (1 day ago)
- Adamtaranto/deRIP2 - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments. (1 month ago)
- WEHI-Education/Workshop-IntroToHPC-Slurm - RCP Training introducing HPC concepts and SLURM (1 month ago)
- WEHI-Education/Workshop-intermediate-slurm - Intermedate Slurm Workshop source code using the Software Carpentry Workbench style. (1 month ago)
- tseemann/mlst (v2.33.0, 3 weeks ago) - 🆔 Scan contig files against PubMLST typing schemes
- dalofa/telomore (v0.4.1, 2 months ago) - Gotta find them telomeres
- Adamtaranto/tSplit (v0.3.0, 2 months ago) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
- flexidot-bio/flexidot (v2.1.0, 2 months ago) - Highly customizable, ambiguity-aware dotplots for visual sequence analyses
- Adamtaranto/TIRmite (v1.3.0, 3 months ago) - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.