diff --git a/Cargo.lock b/Cargo.lock
index 25d9523..f814aea 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -203,9 +203,9 @@ dependencies = [
 
 [[package]]
 name = "cc"
-version = "1.2.58"
+version = "1.2.61"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e1e928d4b69e3077709075a938a05ffbedfa53a84c8f766efbf8220bb1ff60e1"
+checksum = "d16d90359e986641506914ba71350897565610e87ce0ad9e6f28569db3dd5c6d"
 dependencies = [
  "find-msvc-tools",
  "shlex",
@@ -234,9 +234,9 @@ dependencies = [
 
 [[package]]
 name = "clap"
-version = "4.6.0"
+version = "4.6.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b193af5b67834b676abd72466a96c1024e6a6ad978a1f484bd90b85c94041351"
+checksum = "1ddb117e43bbf7dacf0a4190fef4d345b9bad68dfc649cb349e7d17d28428e51"
 dependencies = [
  "clap_builder",
  "clap_derive",
@@ -256,9 +256,9 @@ dependencies = [
 
 [[package]]
 name = "clap_derive"
-version = "4.6.0"
+version = "4.6.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1110bd8a634a1ab8cb04345d8d878267d57c3cf1b38d91b71af6686408bbca6a"
+checksum = "f2ce8604710f6733aa641a2b3731eaa1e8b3d9973d5e3565da11800813f997a9"
 dependencies = [
  "heck",
  "proc-macro2 1.0.106",
@@ -495,9 +495,9 @@ dependencies = [
 
 [[package]]
 name = "hashbrown"
-version = "0.16.1"
+version = "0.17.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "841d1cc9bed7f9236f321df977030373f4a4163ae1a7dbfe1a51a2c1a51d9100"
+checksum = "4f467dd6dccf739c208452f8014c75c18bb8301b050ad1cfb27153803edb0f51"
 
 [[package]]
 name = "heck"
@@ -507,12 +507,12 @@ checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
 
 [[package]]
 name = "indexmap"
-version = "2.13.0"
+version = "2.14.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7714e70437a7dc3ac8eb7e6f8df75fd8eb422675fc7678aff7364301092b1017"
+checksum = "d466e9454f08e4a911e14806c24e16fba1b4c121d1ea474396f396069cf949d9"
 dependencies = [
  "equivalent",
- "hashbrown 0.16.1",
+ "hashbrown 0.17.0",
 ]
 
 [[package]]
@@ -553,15 +553,15 @@ checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe"
 
 [[package]]
 name = "libbz2-rs-sys"
-version = "0.2.2"
+version = "0.2.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2c4a545a15244c7d945065b5d392b2d2d7f21526fba56ce51467b06ed445e8f7"
+checksum = "b3a6a8c165077efc8f3a971534c50ea6a1a18b329ef4a66e897a7e3a1494565f"
 
 [[package]]
 name = "libc"
-version = "0.2.183"
+version = "0.2.186"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b5b646652bf6661599e1da8901b3b9522896f01e736bad5f723fe7a3a27f899d"
+checksum = "68ab91017fe16c622486840e4c83c9a37afeff978bd239b5293d61ece587de66"
 
 [[package]]
 name = "libm"
@@ -571,9 +571,9 @@ checksum = "b6d2cec3eae94f9f509c767b45932f1ada8350c4bdb85af2fcab4a3c14807981"
 
 [[package]]
 name = "libz-ng-sys"
-version = "1.1.25"
+version = "1.1.28"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "89b6bd0c289b22f4973012fa91dfed9d5f4b633567bb26f9454fbf437817b499"
+checksum = "be734b33b7bc6a42d92d23e25e69758f866cf564a88d0bf80866fcf5a52c2255"
 dependencies = [
  "cmake",
  "libc",
@@ -581,9 +581,9 @@ dependencies = [
 
 [[package]]
 name = "libz-sys"
-version = "1.1.25"
+version = "1.1.28"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d52f4c29e2a68ac30c9087e1b772dc9f44a2b66ed44edf2266cf2be9b03dafc1"
+checksum = "fc3a226e576f50782b3305c5ccf458698f92798987f551c6a02efe8276721e22"
 dependencies = [
  "cc",
  "libc",
@@ -796,9 +796,9 @@ dependencies = [
 
 [[package]]
 name = "pkg-config"
-version = "0.3.32"
+version = "0.3.33"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7edddbd0b52d732b21ad9a5fab5c704c14cd949e5e9a1ec5929a24fded1b904c"
+checksum = "19f132c84eca552bf34cab8ec81f1c1dcc229b811638f9d283dceabe58c5569e"
 
 [[package]]
 name = "portable-atomic"
@@ -808,9 +808,9 @@ checksum = "c33a9471896f1c69cecef8d20cbe2f7accd12527ce60845ff44c153bb2a21b49"
 
 [[package]]
 name = "portable-atomic-util"
-version = "0.2.6"
+version = "0.2.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "091397be61a01d4be58e7841595bd4bfedb15f1cd54977d79b8271e94ed799a3"
+checksum = "c2a106d1259c23fac8e543272398ae0e3c0b8d33c88ed73d0cc71b0f1d902618"
 dependencies = [
  "portable-atomic",
 ]
@@ -930,9 +930,9 @@ checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"
 
 [[package]]
 name = "rayon"
-version = "1.11.0"
+version = "1.12.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "368f01d005bf8fd9b1206fb6fa653e6c4a81ceb1466406b81792d87c5677a58f"
+checksum = "fb39b166781f92d482534ef4b4b1b2568f42613b53e5b6c160e24cfbfa30926d"
 dependencies = [
  "either",
  "rayon-core",
@@ -1175,9 +1175,9 @@ checksum = "22048bc95dfb2ffd05b1ff9a756290a009224b60b2f0e7525faeee7603851e63"
 
 [[package]]
 name = "typenum"
-version = "1.19.0"
+version = "1.20.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "562d481066bde0658276a35467c4af00bdc6ee726305698a55b86e61d7ad82bb"
+checksum = "40ce102ab67701b8526c123c1bab5cbe42d7040ccfd0f64af1a385808d2f43de"
 
 [[package]]
 name = "unicode-ident"
diff --git a/Cargo.toml b/Cargo.toml
index 4ea8681..70027d6 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -10,9 +10,9 @@ description = "A tool to filter fastq files"
 
 [dependencies]
 bio = "3.0.0"
-clap = { version = "4.6.0", features = ["derive"] }
+clap = { version = "4.6.1", features = ["derive"] }
 crossbeam-channel = "0.5"
-rayon = "1.7.0"
+rayon = "1.12.0"
 approx = "0.5.1"
 minimap2 = "0.1.31"
 flate2 = { version = "1.1.9", features = [