How to process data from BGI DNB C4 platform

[sjzhao1123134332]

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A clear and concise description of what the issue is.

CRA008947
├── Leaf-1
│   ├── Leaf-1_cDNA.R1.fq.gz
│   ├── Leaf-1_cDNA.R2.fq.gz
│   ├── Leaf-1_oligo.R1.fq.gz
│   └── Leaf-1_oligo.R2.fq.gz
├── Leaf-2
│   ├── Leaf-2_cDNA.R1.fq.gz
│   ├── Leaf-2_cDNA.R2.fq.gz
│   ├── Leaf-2_oligo.R1.fq.gz
│   └── Leaf-2_oligo.R2.fq.gz
├── Nodule-1
│   ├── Nodule-1_cDNA.R1.fq.gz
│   ├── Nodule-1_cDNA.R2.fq.gz
│   ├── Nodule-1_oligo.R1.fq.gz
│   └── Nodule-1_oligo.R2.fq.gz
├── Nodule-2
│   ├── Nodule-2_cDNA.R1.fq.gz
│   ├── Nodule-2_cDNA.R2.fq.gz
│   ├── Nodule-2_oligo.R1.fq.gz
│   └── Nodule-2_oligo.R2.fq.gz
├── Root-1
│   ├── Root-1_cDNA.R1.fq.gz
│   ├── Root-1_cDNA.R2.fq.gz
│   ├── Root-1_oligo.R1.fq.gz
│   └── Root-1_oligo.R2.fq.gz
├── Root-2
│   ├── Root-2_cDNA.R1.fq.gz
│   ├── Root-2_cDNA.R2.fq.gz
│   ├── Root-2_oligo.R1.fq.gz
│   └── Root-2_oligo.R2.fq.gz
├── SAM-1
│   ├── SAM-1_cDNA.R1.fq.gz
│   ├── SAM-1_cDNA.R2.fq.gz
│   ├── SAM-1_oligo.R1.fq.gz
│   └── SAM-1_oligo.R2.fq.gz
├── SAM-2
│   ├── SAM-2_cDNA.R1.fq.gz
│   ├── SAM-2_cDNA.R2.fq.gz
│   ├── SAM-2_oligo.R1.fq.gz
│   └── SAM-2_oligo.R2.fq.gz
├── SRR_Acc_List.txt
├── Stem-1
│   ├── Stem-1_cDNA.R1.fq.gz
│   ├── Stem-1_cDNA.R2.fq.gz
│   ├── Stem-1_oligo.R1.fq.gz
│   └── Stem-1_oligo.R2.fq.gz
└── Stem-2
    ├── Stem-2_cDNA.R1.fq.gz
    ├── Stem-2_cDNA.R2.fq.gz
    ├── Stem-2_oligo.R1.fq.gz
    └── Stem-2_oligo.R2.fq.gz

Just want to process all of my single cell data in one tool.