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    • merrin

      Public
      MERRIN - MEtabolic Regulation Rule INference
      Python
      0100Updated Apr 14, 2026Apr 14, 2026
    • caspo

      Public
      Reasoning on the response of logical signaling networks with Answer Set Programming
      Python
      GNU General Public License v3.0
      41510Updated Feb 10, 2026Feb 10, 2026
    • Python
      GNU Lesser General Public License v3.0
      0000Updated Feb 4, 2026Feb 4, 2026
    • seed2lp

      Public
      Jupyter Notebook
      GNU Lesser General Public License v3.0
      0710Updated Feb 2, 2026Feb 2, 2026
    • bonesis

      Public archive
      Synthesis of Most Permissive Boolean Networks from network architecture and dynamical properties
      Python
      1600Updated Dec 30, 2024Dec 30, 2024
    • iggy

      Public
      :arrow_upper_right: Influence graph analysis, consistency check, diagnosis, repair and prediction
      Rust
      GNU General Public License v3.0
      3815Updated Jul 17, 2023Jul 17, 2023
    • meneco

      Public
      :m: Metabolic network completion
      Jupyter Notebook
      GNU General Public License v3.0
      9941Updated Feb 17, 2023Feb 17, 2023
    • Jupyter Notebook
      0000Updated Jun 20, 2022Jun 20, 2022
    • ingranalyze

      Public archive
      Influence graph analysis, consistency check, diagnosis, repair and prediction
      Python
      GNU General Public License v3.0
      0400Updated Aug 28, 2021Aug 28, 2021
    • Jupyter Notebook
      0000Updated Jul 5, 2021Jul 5, 2021
    • caspots

      Public
      Boolean network inference from time series data with perturbations
      Python
      2300Updated Apr 13, 2020Apr 13, 2020
    • a simple gui for meneco
      Python
      GNU General Public License v3.0
      0100Updated Apr 6, 2020Apr 6, 2020
    • Website for the BioASP software collection
      HTML
      1000Updated Apr 6, 2020Apr 6, 2020
    • exdesi

      Public
      Design experiments to differentiate interaction graph models
      TeX
      GNU General Public License v3.0
      0100Updated Jan 9, 2020Jan 9, 2020
    • precursor

      Public
      Compute minimal metabolic precursors sets that enable the production of target metabolites
      Python
      GNU General Public License v3.0
      0200Updated Mar 28, 2019Mar 28, 2019
    • shogen

      Public
      Finding shortest genome segments that regulate metabolic pathways
      Python
      GNU General Public License v3.0
      0000Updated Dec 10, 2015Dec 10, 2015
    • meneco-pp

      Public
      meneco++
      Python
      0000Updated Oct 8, 2015Oct 8, 2015
    • bioasp

      Public
      BioASP software collection
      Python
      GNU General Public License v3.0
      0100Updated Jun 2, 2014Jun 2, 2014
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