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    18 repositories

    • merrin

      Public
      MERRIN - MEtabolic Regulation Rule INference
      Python
      •0•1•0•0•Updated Apr 14, 2026Apr 14, 2026

    • caspo

      Public
      Reasoning on the response of logical signaling networks with Answer Set Programming
      Python
      •
      GNU General Public License v3.0
      •4•15•1•0•Updated Feb 10, 2026Feb 10, 2026

    • docker-seed-inference-tutorial

      Public
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • seed2lp

      Public
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •0•7•1•0•Updated Feb 2, 2026Feb 2, 2026

    • bonesis

      Public archive
      Synthesis of Most Permissive Boolean Networks from network architecture and dynamical properties
      Python
      •1•6•0•0•Updated Dec 30, 2024Dec 30, 2024

    • iggy

      Public
      :arrow_upper_right: Influence graph analysis, consistency check, diagnosis, repair and prediction
      cell-signallinginfluence-graphs
      cell-signallinginfluence-graphs
      Rust
      •
      GNU General Public License v3.0
      •3•8•1•5•Updated Jul 17, 2023Jul 17, 2023

    • meneco

      Public
      :m: Metabolic network completion
      metabolic-reconstructionmetabolic-pathways
      metabolic-reconstructionmetabolic-pathways
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •9•9•4•1•Updated Feb 17, 2023Feb 17, 2023

    • merrin-covert

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 20, 2022Jun 20, 2022

    • ingranalyze

      Public archive
      Influence graph analysis, consistency check, diagnosis, repair and prediction
      cell-signalling
      cell-signalling
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Aug 28, 2021Aug 28, 2021

    • boolean-caspo-flux

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 5, 2021Jul 5, 2021

    • caspots

      Public
      Boolean network inference from time series data with perturbations
      Python
      •2•3•0•0•Updated Apr 13, 2020Apr 13, 2020

    • meneco-gui

      Public
      a simple gui for meneco
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 6, 2020Apr 6, 2020

    • bioasp.github.io

      Public
      Website for the BioASP software collection
      HTML
      •1•0•0•0•Updated Apr 6, 2020Apr 6, 2020

    • exdesi

      Public
      Design experiments to differentiate interaction graph models
      cell-signalling
      cell-signalling
      TeX
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 9, 2020Jan 9, 2020

    • precursor

      Public
      Compute minimal metabolic precursors sets that enable the production of target metabolites
      metabolic-network
      metabolic-network
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Mar 28, 2019Mar 28, 2019

    • shogen

      Public
      Finding shortest genome segments that regulate metabolic pathways
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 10, 2015Dec 10, 2015

    • meneco-pp

      Public
      meneco++
      Python
      •0•0•0•0•Updated Oct 8, 2015Oct 8, 2015

    • bioasp

      Public
      BioASP software collection
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 2, 2014Jun 2, 2014
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