Repositories list

• CDM5104_Lipidomics

  Public
  TeX

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• MASLD_dual_omics

  Public
  R

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• MRMhub

  Public
  A toolkit for processing targeted small molecule mass spectrometry data

  quality-controlmetabolomicsmass-spectrometry+ 6

  quality-controlmetabolomicsmass-spectrometrylc-msdata-processinglipidomicssmall-moleculespeak-identificationpeak-integration

  R

  •

  Other

  •00 forks•55 stars•00 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• mrmhub-workflows

  Public
  TeX

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 24, 2025Nov 24, 2025

• midar

  Public
  Small Molecule Mass Spectrometry Data Post-Processing, Quality Control, Exploration and Reporting

  rmetabolomicsmass-spectrometry+ 3

  rmetabolomicsmass-spectrometryquantitativelipidomicsdata-post-processing

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks•77 stars•00 issues•00 pull requests•Updated Oct 2, 2025Oct 2, 2025

• PHM5002

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 16, 2025Sep 16, 2025

• MetaboKit

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •55 forks•99 stars•00 issues•00 pull requests•Updated Aug 19, 2025Aug 19, 2025

• StratiRandom_Shiny

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 7, 2025May 7, 2025

• RQCee

  Public
  Response curve analysis app

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2025Apr 24, 2025

• RFkit

  Public
  A Tool for Processing Ultrahigh-throughput Targeted Analysis Files acquired from Agilent Technologies RapidFire system coupled to MS (QQQ)

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Dec 4, 2024Dec 4, 2024

• sling-data-workshop-2024

  Public
  HTML

  •

  MIT License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Oct 29, 2024Oct 29, 2024

• rqcViewer

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 23, 2024Sep 23, 2024

• Burla_2024_FabryLipidomics

  Public
  R

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 13, 2024Jun 13, 2024

• LICAR

  Public
  Isotopic interference correction for class-based separation LC-MRM-MS lipidomics data

  rshinylipidomics+ 2

  rshinylipidomicsisotope-correctionmassspectrometry

  R

  •

  MIT License

  •44 forks•44 stars•11 issue•00 pull requests•Updated Apr 1, 2024Apr 1, 2024

• iSLS12_2024

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 2, 2024Mar 2, 2024

• authorlistR

  Public
  JavaScript

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 8, 2023Nov 8, 2023

• lancer

  Public
  Linearity Assessment and Curve Explorer

  R

  •

  Other

  •00 forks•33 stars•00 issues•00 pull requests•Updated Oct 17, 2023Oct 17, 2023

• SLING_ResearchUpdate_Q3_2023

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 12, 2023Sep 12, 2023

• StratiRandom

  Public
  R script and Shiny app to perform stratified randomisation

  randomizationlc-msbatch-effects+ 1

  randomizationlc-msbatch-effectscohort-studies

  R

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 28, 2023Aug 28, 2023

• rbasel2023

  Public
  R/Basel 2023 talk

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 21, 2023Jul 21, 2023

• Talk_SLING_RU2023Q2

  Public
  CSS

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 22, 2023Jun 22, 2023

• iSLS11

  Public
  Scripts and notes used in the iSLS11 workshop on data analysis

  processingdatar+ 5

  processingdataranalysisspectrometrylipidomicsmassbiological-variability

  HTML

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 9, 2023Jun 9, 2023

• SLINGtools

  Public
  Facilitate lipidomics data analysis in R

  rlipidomics

  rlipidomics

  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 20, 2023Apr 20, 2023

• MSTemplate_Creator

  Public
  An excel macro file to provide users a more friendly interface to create annotation files from MRM transition names data.

  VBA

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 18, 2023Apr 18, 2023

• RwithSLING

  Public
  RwithSLING notes

  rlipidomics

  rlipidomics

  TeX

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 29, 2022Sep 29, 2022

• MSOrganiser

  Public
  A standalone Windows executable software that extracts and organizes MRM transition names data in a few button clicks.

  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 8, 2022Sep 8, 2022

• explore

  Public
  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 7, 2022Jun 7, 2022

• iSLS10

  Public
  iSLS10 data analysis workshop

  rworkshoplipidomics+ 2

  rworkshoplipidomicsdataanalysisisls10

  R

  •

  MIT License

  •22 forks•22 stars•00 issues•00 pull requests•Updated Mar 9, 2022Mar 9, 2022

• iSLS9

  Public archive
  iSLS9 data analysis workshop

  rlipidomicsdataanalysis

  rlipidomicsdataanalysis

  R

  •

  MIT License

  •11 fork•11 star•00 issues•00 pull requests•Updated Mar 8, 2021Mar 8, 2021

• MRMtraceClust

  Public
  Functions to handle MRM data stored in mzML files

  rmrmlcms

  rmrmlcms

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2021Feb 17, 2021