diff --git a/anatomical_map.json b/anatomical_map.json
index ab7d275..9e05632 100644
--- a/anatomical_map.json
+++ b/anatomical_map.json
@@ -479,10 +479,18 @@
"term": "UBERON:0012402",
"name": "small intestine smooth muscle longitudinal layer"
},
+ "digestive_36": {
+ "term": "ILX:0793739",
+ "name": "Nerve fiber from submandibular ganglion to sublingual gland"
+ },
"digestive_37": {
"term": "UBERON:0012401",
"name": "small intestine smooth muscle circular layer"
},
+ "digestive_38": {
+ "term": "ILX:0793738",
+ "name": "Nerve fiber from submandibular ganglion to mouth mucosa"
+ },
"digestive_39": {
"term": "UBERON:0001238",
"name": "lamina propria of small intestine"
@@ -515,6 +523,10 @@
"term": "ILX:0770759",
"name": "Lamina propria mucosae of descending colon"
},
+ "digestive_47": {
+ "term": "ILX:0793737",
+ "name": "Nerve fiber from submandibular ganglion to submandibular gland"
+ },
"digestive_48": {
"term": "ILX:0771089",
"name": "Serosa of descending colon"
@@ -659,10 +671,6 @@
"term": "UBERON:0003216",
"name": "hard palate"
},
- "digestive_86": {
- "term": "UBERON:0002059",
- "name": "Submandibular ganglion"
- },
"digestive_85": {
"term": "UBERON:0000006",
"name": "Islet of langerhans"
@@ -783,6 +791,14 @@
"term": "UBERON:0003354",
"name": "anal canal epithelium"
},
+ "digestive_116": {
+ "term": "UBERON:0001182",
+ "name": "superior mesenteric artery"
+ },
+ "digestive_117": {
+ "term": "UBERON:0006637",
+ "name": "celiac trunk"
+ },
"skeleton_1": {
"term": "UBERON:0001684",
"name": "mandible"
@@ -892,8 +908,8 @@
"name": "Epithelium of Vagina"
},
"reproductive_23": {
- "term": "UBERON:0009853",
- "name": "Body of Uterus"
+ "term": "ILX:0794769",
+ "name": "Upper uterine segment"
},
"reproductive_24": {
"term": "UBERON:0001981",
@@ -939,6 +955,34 @@
"term": "UBERON:0003984",
"name": "Uterine tube infundibulum"
},
+ "reproductive_35": {
+ "term": "ILX:0794767",
+ "name": "smooth muscle of the upper uterus"
+ },
+ "reproductive_36": {
+ "term": "ILX:0794765",
+ "name": "blood vessel of the upper uterus"
+ },
+ "reproductive_37": {
+ "term": "ILX:0794770",
+ "name": "lower uterine segment"
+ },
+ "reproductive_38": {
+ "term": "ILX:0794768",
+ "name": "smooth muscle of the lower uterus"
+ },
+ "reproductive_39": {
+ "term": "ILX:0794766",
+ "name": "blood vessel of the lower uterus"
+ },
+ "reproductive_40": {
+ "term": "ILX:0794731",
+ "name": "smooth muscle of the cervix"
+ },
+ "reproductive_41": {
+ "term": "ILX:0794738",
+ "name": "blood vessel of the cervix"
+ },
"muscle_1": {
"term": "ILX:0738319",
"name": "T1-T2 intercostal muscle"
diff --git a/connectivity_terms_female.json b/connectivity_terms_female.json
index 0efddd9..d3974a4 100644
--- a/connectivity_terms_female.json
+++ b/connectivity_terms_female.json
@@ -29,19 +29,6 @@
]
]
},
- {
- "id": [
- "ILX:0738291",
- []
- ],
- "name": "t1 - inferior cervical ganglion interganglionic segment of the sympathetic chain",
- "aliases": [
- [
- "UBERON:0002441",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0016578",
@@ -195,22 +182,6 @@
"ILX:0793821",
[]
],
- [
- "ILX:0794732",
- []
- ],
- [
- "UBERON:0005734",
- [
- "UBERON:0001182"
- ]
- ],
- [
- "UBERON:0005734",
- [
- "UBERON:0006637"
- ]
- ],
[
"UBERON:0018676",
[]
@@ -284,21 +255,6 @@
]
]
},
- {
- "id": [
- "UBERON:0005364",
- [
- "UBERON:0005363"
- ]
- ],
- "name": "",
- "aliases": [
- [
- "UBERON:0003535",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0016580",
@@ -327,32 +283,6 @@
]
]
},
- {
- "id": [
- "ILX:0786722",
- []
- ],
- "name": "third thoracic ganglion",
- "aliases": [
- [
- "ILX:0793618",
- []
- ]
- ]
- },
- {
- "id": [
- "ILX:0786272",
- []
- ],
- "name": "fourth thoracic ganglion",
- "aliases": [
- [
- "ILX:0793619",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0006459",
@@ -392,19 +322,6 @@
]
]
},
- {
- "id": [
- "ILX:0786228",
- []
- ],
- "name": "",
- "aliases": [
- [
- "ILX:0793617",
- []
- ]
- ]
- },
{
"id": [
"ILX:0789947",
@@ -457,32 +374,6 @@
]
]
},
- {
- "id": [
- "UBERON:0001736",
- []
- ],
- "name": "submandibular gland",
- "aliases": [
- [
- "ILX:0793737",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0001832",
- []
- ],
- "name": "sublingual gland",
- "aliases": [
- [
- "ILX:0793739",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0001723",
@@ -490,17 +381,9 @@
],
"name": "tongue",
"aliases": [
- [
- "UBERON:0003721",
- []
- ],
[
"UBERON:0003729",
[]
- ],
- [
- "ILX:0793738",
- []
]
]
},
@@ -552,10 +435,6 @@
[
"UBERON:0001305",
[]
- ],
- [
- "UBERON:0001190",
- []
]
]
},
@@ -684,10 +563,6 @@
[
"ILX:0793816",
[]
- ],
- [
- "UBERON:0007715",
- []
]
]
},
@@ -792,19 +667,6 @@
]
]
},
- {
- "id": [
- "UBERON:0005453",
- []
- ],
- "name": "inferior mesenteric ganglion",
- "aliases": [
- [
- "UBERON:0035770",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0011776",
@@ -830,10 +692,6 @@
[
"UBERON:0015173",
[]
- ],
- [
- "ILX:0794731",
- []
]
]
},
@@ -854,40 +712,6 @@
]
]
},
- {
- "id": [
- "UBERON:0009853",
- []
- ],
- "name": "body of uterus",
- "aliases": [
- [
- "ILX:0794769",
- []
- ],
- [
- "ILX:0794767",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0000002",
- []
- ],
- "name": "uterine cervix",
- "aliases": [
- [
- "ILX:0794770",
- []
- ],
- [
- "ILX:0794768",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0001981",
@@ -917,44 +741,6 @@
[
"UBERON:0006608",
[]
- ],
- [
- "ILX:0793809",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0001981",
- [
- "UBERON:0000002"
- ]
- ],
- "name": "blood vessel/uterine cervix",
- "aliases": [
- [
- "ILX:0794766",
- []
- ],
- [
- "ILX:0794738",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0001981",
- [
- "UBERON:0009853"
- ]
- ],
- "name": "blood vessel/body of uterus",
- "aliases": [
- [
- "ILX:0794765",
- []
]
]
},
@@ -1113,10 +899,6 @@
[
"UBERON:0004820",
[]
- ],
- [
- "UBERON:0001279",
- []
]
]
},
@@ -1154,6 +936,10 @@
[
"UBERON:0015423",
[]
+ ],
+ [
+ "UBERON:0001279",
+ []
]
]
},
@@ -1246,6 +1032,10 @@
[
"ILX:0794853",
[]
+ ],
+ [
+ "UBERON:0003535",
+ []
]
]
},
@@ -1528,66 +1318,6 @@
]
]
},
- {
- "id": [
- "UBERON:0002315",
- [
- "UBERON:0006457"
- ]
- ],
- "name": "gray matter of spinal cord/T1 segment of thoracic spinal cord",
- "aliases": [
- [
- "ILX:0797432",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0002315",
- [
- "UBERON:0006458"
- ]
- ],
- "name": "gray matter of spinal cord/T2 segment of thoracic spinal cord",
- "aliases": [
- [
- "ILX:0797433",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0002315",
- [
- "UBERON:0006459"
- ]
- ],
- "name": "gray matter of spinal cord/T3 segment of thoracic spinal cord",
- "aliases": [
- [
- "ILX:0797434",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0002315",
- [
- "UBERON:0006455"
- ]
- ],
- "name": "gray matter of spinal cord/T7 segment of thoracic spinal cord",
- "aliases": [
- [
- "ILX:0796498",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0018680",
diff --git a/connectivity_terms_male.json b/connectivity_terms_male.json
index 5f20f5b..b55c37f 100644
--- a/connectivity_terms_male.json
+++ b/connectivity_terms_male.json
@@ -12,19 +12,6 @@
]
]
},
- {
- "id": [
- "ILX:0738291",
- []
- ],
- "name": "t1 - inferior cervical ganglion interganglionic segment of the sympathetic chain",
- "aliases": [
- [
- "UBERON:0002441",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0016578",
@@ -178,22 +165,6 @@
"ILX:0793821",
[]
],
- [
- "ILX:0794732",
- []
- ],
- [
- "UBERON:0005734",
- [
- "UBERON:0006637"
- ]
- ],
- [
- "UBERON:0005734",
- [
- "UBERON:0001182"
- ]
- ],
[
"UBERON:0018676",
[]
@@ -267,21 +238,6 @@
]
]
},
- {
- "id": [
- "UBERON:0005364",
- [
- "UBERON:0005363"
- ]
- ],
- "name": "",
- "aliases": [
- [
- "UBERON:0003535",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0016580",
@@ -336,19 +292,6 @@
]
]
},
- {
- "id": [
- "ILX:0786228",
- []
- ],
- "name": "",
- "aliases": [
- [
- "ILX:0793617",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0006459",
@@ -362,32 +305,6 @@
]
]
},
- {
- "id": [
- "ILX:0786722",
- []
- ],
- "name": "third thoracic ganglion",
- "aliases": [
- [
- "ILX:0793618",
- []
- ]
- ]
- },
- {
- "id": [
- "ILX:0786272",
- []
- ],
- "name": "fourth thoracic ganglion",
- "aliases": [
- [
- "ILX:0793619",
- []
- ]
- ]
- },
{
"id": [
"ILX:0786141",
@@ -453,32 +370,6 @@
]
]
},
- {
- "id": [
- "UBERON:0001736",
- []
- ],
- "name": "submandibular gland",
- "aliases": [
- [
- "ILX:0793737",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0001832",
- []
- ],
- "name": "sublingual gland",
- "aliases": [
- [
- "ILX:0793739",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0001723",
@@ -486,17 +377,9 @@
],
"name": "tongue",
"aliases": [
- [
- "UBERON:0003721",
- []
- ],
[
"UBERON:0003729",
[]
- ],
- [
- "ILX:0793738",
- []
]
]
},
@@ -611,10 +494,6 @@
[
"UBERON:0002366",
[]
- ],
- [
- "UBERON:0011183",
- []
]
]
},
@@ -693,10 +572,6 @@
[
"ILX:0793816",
[]
- ],
- [
- "UBERON:0007715",
- []
]
]
},
@@ -713,19 +588,6 @@
]
]
},
- {
- "id": [
- "UBERON:0005453",
- []
- ],
- "name": "inferior mesenteric ganglion",
- "aliases": [
- [
- "UBERON:0035770",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0011776",
@@ -1097,6 +959,10 @@
[
"ILX:0794853",
[]
+ ],
+ [
+ "UBERON:0003535",
+ []
]
]
},
@@ -1392,66 +1258,6 @@
]
]
},
- {
- "id": [
- "UBERON:0002315",
- [
- "UBERON:0006457"
- ]
- ],
- "name": "gray matter of spinal cord/T1 segment of thoracic spinal cord",
- "aliases": [
- [
- "ILX:0797432",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0002315",
- [
- "UBERON:0006458"
- ]
- ],
- "name": "gray matter of spinal cord/T2 segment of thoracic spinal cord",
- "aliases": [
- [
- "ILX:0797433",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0002315",
- [
- "UBERON:0006459"
- ]
- ],
- "name": "gray matter of spinal cord/T3 segment of thoracic spinal cord",
- "aliases": [
- [
- "ILX:0797434",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0002315",
- [
- "UBERON:0006455"
- ]
- ],
- "name": "gray matter of spinal cord/T7 segment of thoracic spinal cord",
- "aliases": [
- [
- "ILX:0796498",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0018680",
diff --git a/human_flatmap_female.svg b/human_flatmap_female.svg
index 4e92280..5fef6b9 100644
--- a/human_flatmap_female.svg
+++ b/human_flatmap_female.svg
@@ -2269,7 +2269,7 @@
- .class(spinal_32) id(S32_T7)
+ .class(spinal_32) id(S32_T7-Left)
@@ -2478,7 +2478,7 @@
.class(spinal_33) id(S33_T3)
- .class(spinal_32) style(1) closed
+ .id(S32_T1-Left)
@@ -2532,7 +2532,7 @@
.class(spinal_33) id(S33_T2)
- .class(spinal_32) style(1) closed
+ .id(S32_T2-Left)
@@ -2592,7 +2592,7 @@
.class(spinal_33) id(S33_T1)
- .class(spinal_32) style(1) closed
+ .id(S32_T1-Left)
@@ -42734,8 +42734,8 @@
.id(digestive_63-1)
-
- .id(digestive_86-1)
+
+ .id(ganglion_24-1)
.id(digestive_89-1)
@@ -42755,9 +42755,6 @@
.id(urinary_20-Right)
-
- .id(reproductive_15-1)
-
.id(reproductive_16-1)
@@ -42776,15 +42773,6 @@
.id(reproductive_22-1)
-
- .id(reproductive_23-1)
-
-
- .id(reproductive_24-1)
-
-
- .id(reproductive_24-2)
-
.id(reproductive_24-3)
@@ -43212,12 +43200,57 @@
.id(digestive_115-1)
+
+ .id(digestive_47-1)
+
+
+ .id(digestive_36-1)
+
+
+ .id(digestive_38-1)
+
+
+ .id(reproductive_18-1)
+
+
+ .id(reproductive_18-2)
+
+
+ .id(reproductive_23-1)
+
+ .id(reproductive_35-1)
+
+
+ .id(reproductive_36-1)
+
+
+
+ .id(reproductive_37-1)
+
+ .id(reproductive_38-1)
+
+
+ .id(reproductive_39-1)
+
+
+
+ .id(reproductive_15-1)
+
+ .id(reproductive_40-1)
+
+
+ .id(reproductive_41-1)
+
+
+
+ .id(digestive_116-1)
+
+
+ .id(digestive_117-1)
+
ganglia
-
- .id(ganglion_1-1)
-
.id(ganglion_2-1)
@@ -44734,6 +44767,9 @@
.id(plexus_29-1)
+
+ .id(plexus_30-1)
+
cuffs
@@ -45076,5 +45112,11 @@
.id(n_83_c)
+
+ .id(lingual_c)
+
+
+ .id(clitoral_cavernous_c)
+
\ No newline at end of file
diff --git a/human_flatmap_male.svg b/human_flatmap_male.svg
index bf4e9fa..4e72812 100644
--- a/human_flatmap_male.svg
+++ b/human_flatmap_male.svg
@@ -2269,7 +2269,7 @@
- .class(spinal_32) id(S32_T7)
+ .class(spinal_32) id(S32_T7-Left)
@@ -2478,7 +2478,7 @@
.class(spinal_33) id(S33_T3)
- .class(spinal_32) style(1) closed
+ .id(S32_T3-Left)
@@ -2532,7 +2532,7 @@
.class(spinal_33) id(S33_T2)
- .class(spinal_32) style(1) closed
+ .id(S32_T2-Left)
@@ -2592,7 +2592,7 @@
.class(spinal_33) id(S33_T1)
- .class(spinal_32) style(1) closed
+ .id(S32_T1-Left)
@@ -23893,8 +23893,8 @@
.id(digestive_63-1)
-
- .id(digestive_86-1)
+
+ .id(ganglion_24-1)
.id(digestive_89-1)
@@ -24305,12 +24305,24 @@
.id(digestive_115-1)
+
+ .id(digestive_47-1)
+
+
+ .id(digestive_36-1)
+
+
+ .id(digestive_38-1)
+
+
+ .id(digestive_116-1)
+
+
+ .id(digestive_117-1)
+
ganglia
-
- .id(ganglion_1-1)
-
.id(ganglion_2-1)
@@ -25616,6 +25628,9 @@
.id(penile_cavernous_c)
+
+ .id(lingual_c)
+
nodes
diff --git a/properties.json b/properties.json
index 37e5705..7376039 100644
--- a/properties.json
+++ b/properties.json
@@ -2635,6 +2635,12 @@
"trigeminal_nerve_afferent_cn_v_and_ganglion": {
"class": "ganglion_23"
},
+ "ganglion_24-1": {
+ "models": "UBERON:0002059",
+ "name": "Submandibular ganglion",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
"ganglion_25-1": {
"models": "ILX:0794910",
"name": "Ovarian ganglion",
@@ -3148,6 +3154,12 @@
"digestive_33-1": {
"class": "digestive_33"
},
+ "digestive_36-1": {
+ "class": "digestive_36"
+ },
+ "digestive_38-1": {
+ "class": "digestive_38"
+ },
"digestive_44-1": {
"class": "digestive_44"
},
@@ -3157,6 +3169,9 @@
"digestive_46-1": {
"class": "digestive_46"
},
+ "digestive_47-1": {
+ "class": "digestive_47"
+ },
"digestive_48-1": {
"class": "digestive_48"
},
@@ -3313,9 +3328,6 @@
"digestive_85-1": {
"class": "digestive_85"
},
- "digestive_86-1": {
- "class": "digestive_86"
- },
"digestive_87-1": {
"class": "digestive_87"
},
@@ -3406,6 +3418,12 @@
"digestive_115-1": {
"class": "digestive_115"
},
+ "digestive_116-1": {
+ "class": "digestive_116"
+ },
+ "digestive_117-1": {
+ "class": "digestive_117"
+ },
"skeleton_1-1": {
"class": "skeleton_1"
},
@@ -3553,6 +3571,12 @@
"reproductive_17-1": {
"class": "reproductive_17"
},
+ "reproductive_18-1": {
+ "class": "reproductive_18"
+ },
+ "reproductive_18-2": {
+ "class": "reproductive_18"
+ },
"reproductive_19-1": {
"class": "reproductive_19"
},
@@ -3622,6 +3646,27 @@
"reproductive_34-2": {
"class": "reproductive_34"
},
+ "reproductive_35-1": {
+ "class": "reproductive_35"
+ },
+ "reproductive_36-1": {
+ "class": "reproductive_36"
+ },
+ "reproductive_37-1": {
+ "class": "reproductive_37"
+ },
+ "reproductive_38-1": {
+ "class": "reproductive_38"
+ },
+ "reproductive_39-1": {
+ "class": "reproductive_39"
+ },
+ "reproductive_40-1": {
+ "class": "reproductive_40"
+ },
+ "reproductive_41-1": {
+ "class": "reproductive_41"
+ },
"respiratory_10-1": {
"class": "respiratory_10"
},
@@ -3766,6 +3811,18 @@
"spinal_31-19": {
"class": "spinal_31"
},
+ "S32_T1-Left": {
+ "models": "ILX:0797432",
+ "name": "Dorsal grey horn of left T1"
+ },
+ "S32_T2-Left": {
+ "models": "ILX:0797433",
+ "name": "Dorsal grey horn of left T2"
+ },
+ "S32_T3-Left": {
+ "models": "ILX:0797434",
+ "name": "Dorsal grey horn of left T3"
+ },
"S32_T6": {
"class": "spinal_32"
},
@@ -3780,6 +3837,10 @@
"models": "ILX:0795041",
"name": "Dorsal grey horn of right T7"
},
+ "S32_T7-Left": {
+ "models": "ILX:0796498",
+ "name": "Dorsal grey horn of left T7"
+ },
"S32_T8": {
"class": "spinal_32"
},
@@ -4096,6 +4157,12 @@
"type": "ganglion",
"class": "auto-hide"
},
+ "plexus_30-1": {
+ "models": "ILX:0794732",
+ "name": "intermesenteric plexus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
"label_8-1": {
"class": "label_8"
},
@@ -4540,6 +4607,14 @@
"type": "nerve",
"models": "ILX:0793807"
},
+ "lingual_c": {
+ "type": "nerve",
+ "models": "UBERON:0003721"
+ },
+ "clitoral_cavernous_c": {
+ "type": "nerve",
+ "models": "ILX:0793809"
+ },
"n_84_c": {
"type": "nerve"
},
diff --git a/proxy_features.json b/proxy_features.json
index df87009..d062c4e 100644
--- a/proxy_features.json
+++ b/proxy_features.json
@@ -842,5 +842,82 @@
"proxies": [
"ILX:0785106"
]
+ },
+ {
+ "feature": "UBERON:0002441",
+ "name": "cervicothoracic ganglion",
+ "proxies": [
+ "ILX:0794890"
+ ]
+ },
+ {
+ "feature": "ILX:0793617",
+ "name": "T2 sympathetic chain",
+ "proxies": [
+ "ILX:0786012"
+ ]
+ },
+ {
+ "feature": "ILX:0793618",
+ "name": "T3 sympathetic chain",
+ "proxies": [
+ "ILX:0790407"
+ ]
+ },
+ {
+ "feature": "ILX:0793619",
+ "name": "T4 sympathetic chain",
+ "proxies": [
+ "ILX:0785536"
+ ]
+ },
+ {
+ "feature": "ILX:0793335",
+ "name": "T5 sympathetic chain",
+ "proxies": [
+ "ILX:0786912"
+ ]
+ },
+ {
+ "feature": "ILX:0793336",
+ "name": "T6 sympathetic chain",
+ "proxies": [
+ "ILX:0791060"
+ ]
+ },
+ {
+ "feature": "UBERON:0035770",
+ "name": "inferior mesenteric nerve plexus",
+ "proxies": [
+ "UBERON:0005453"
+ ]
+ },
+ {
+ "feature": "UBERON:0007715",
+ "name": "thoracic subsegment of spinal cord",
+ "proxies": [
+ "UBERON:0006468"
+ ]
+ },
+ {
+ "feature": "UBERON:0007716",
+ "name": "lumbar subsegment of spinal cord",
+ "proxies": [
+ "UBERON:0006448"
+ ]
+ },
+ {
+ "feature": "UBERON:0011183",
+ "name": "corpus spongiosum of penis",
+ "proxies": [
+ "UBERON:0001299"
+ ]
+ },
+ {
+ "feature": "UBERON:0001780",
+ "name": "spinal nerve",
+ "proxies": [
+ "ILX:0788282"
+ ]
}
]